Laboratory of Molecular Genetics & Immunology, The Rockefeller University, New York, NY, USA.
Structural Biology Resource Center, The Rockefeller University, New York, NY, USA.
Nat Commun. 2023 May 18;14(1):2853. doi: 10.1038/s41467-023-38453-1.
Immunoglobulin G (IgG) antibodies contain a complex N-glycan embedded in the hydrophobic pocket between its heavy chain protomers. This glycan contributes to the structural organization of the Fc domain and determines its specificity for Fcγ receptors, thereby dictating distinct cellular responses. The variable construction of this glycan structure leads to highly-related, but non-equivalent glycoproteins known as glycoforms. We previously reported synthetic nanobodies that distinguish IgG glycoforms. Here, we present the structure of one such nanobody, X0, in complex with the Fc fragment of afucosylated IgG1. Upon binding, the elongated CDR3 loop of X0 undergoes a conformational shift to access the buried N-glycan and acts as a 'glycan sensor', forming hydrogen bonds with the afucosylated IgG N-glycan that would otherwise be sterically hindered by the presence of a core fucose residue. Based on this structure, we designed X0 fusion constructs that disrupt pathogenic afucosylated IgG1-FcγRIIIa interactions and rescue mice in a model of dengue virus infection.
免疫球蛋白 G(IgG)抗体包含一个复杂的 N-聚糖,嵌入其重链二聚体之间的疏水性口袋中。这种聚糖有助于 Fc 结构域的结构组织,并决定其对 Fcγ 受体的特异性,从而决定了独特的细胞反应。这种糖基化结构的可变结构导致了高度相关但不等效的糖蛋白,称为糖型。我们之前报道了可以区分 IgG 糖型的合成纳米抗体。在这里,我们展示了一种这样的纳米抗体 X0 与去岩藻糖基化 IgG1 的 Fc 片段复合物的结构。结合后,X0 的伸长 CDR3 环发生构象转变,以进入埋藏的 N-聚糖,并充当“聚糖传感器”,与去岩藻糖基化 IgG N-聚糖形成氢键,否则会被核心岩藻糖残基的存在阻碍。基于该结构,我们设计了 X0 融合构建体,可破坏致病性去岩藻糖基化 IgG1-FcγRIIIa 相互作用,并在登革热病毒感染模型中拯救小鼠。