Biodonostia Health Research Institute, Basque Research and Technology Alliance (BRTA), 20014 Donostia-San Sebastián, Spain.
Fundación Vicomtech, Basque Research and Technology Alliance (BRTA), 20009 Donostia-San Sebastián, Spain.
Stud Health Technol Inform. 2023 May 18;302:1042-1046. doi: 10.3233/SHTI230343.
Omics sciences, especially transcriptomics, have grown exponentially since the first human genome was sequenced in 2003. Different tools have been developed in the past years for the analysis of this kind of data, but many of them require specific programming knowledge to be used. In this paper, we present omicSDK-transcriptomics, the transcriptomics module of OmicSDK, a comprehensive tool for omics data analysis that combines pre-processing, annotation and visualization tools to be used with omics data. OmicSDK comprises a command-line tool and a user-friendly web solution, so researchers having different backgrounds can take advantage of all its functionalities.
自 2003 年首次成功测序人类基因组以来，组学科学，尤其是转录组学，呈指数级增长。过去几年已经开发出不同的工具来分析这种数据，但其中许多工具都需要特定的编程知识才能使用。在本文中，我们介绍了 omicSDK-transcriptomics，这是 OmicSDK 的转录组学模块，OmicSDK 是一个用于组学数据分析的综合工具，它结合了预处理、注释和可视化工具，可与组学数据一起使用。OmicSDK 包括一个命令行工具和一个用户友好的 Web 解决方案，因此具有不同背景的研究人员都可以利用它的所有功能。
