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对来自印度的人与动物源复合体的综合分类学分析。

Comprehensive Taxonomical Analysis of Complex of Human and Animal Origin from India.

作者信息

Rudramurthy Shivaprakash M, Shaw Dipika, Shankarnarayan Shamanth Adekhandi, Dogra Sunil

机构信息

Department of Medical Microbiology, Postgraduate Institute of Medical Education and Research, Chandigarh 160012, India.

Department of Microbiology, Indian Veterinary Research Institute, Izatnagar, Bareilly 243122, India.

出版信息

J Fungi (Basel). 2023 May 16;9(5):577. doi: 10.3390/jof9050577.

Abstract

Taxonomic delineation of etiologic agents responsible for recalcitrant dermatophytosis causing an epidemic in India is still debated. The organism responsible for this epidemic is designated as , a clonal offshoot of . To evaluate the real identity of the agent causing this epidemic, we performed a multigene sequence analysis of species isolated from human and animal origin. We included species isolated from 213 human and six animal hosts. Internal transcribed spacer (ITS) ( = 219), translational elongation factors () ( = 40), ß-tubulin (BT) ( = 40), large ribosomal subunit (LSU) ( = 34), calmodulin (CAL) ( = 29), high mobility group () transcription factor gene ( = 17) and α-box gene ( = 17) were sequenced. Our sequences were compared with species complex sequences in the NCBI database. Except for one isolate (ITS genotype III) from animal origin, all the tested genes grouped our isolates and belonged to the "Indian ITS genotype", currently labeled as . ITS and were more congruent compared to other genes. In this study, for the first time, we isolated the ITS Type VIII from animal origin, suggesting the role of zoonotic transmission in the ongoing epidemic. Isolation of type III only from animal indicates its niche among animals. Outdated/inaccurate naming for these dermatophytes in the public database has created confusion in using appropriate species designation.

摘要

对在印度引发疫情的顽固性皮肤癣菌病致病病原体的分类界定仍存在争议。引发此次疫情的病原体被指定为 ,它是 的一个克隆分支。为评估引发此次疫情的病原体的真实身份,我们对从人和动物身上分离出的 物种进行了多基因序列分析。我们纳入了从213名人类和6只动物宿主身上分离出的 物种。对内部转录间隔区(ITS)( = 219)、翻译延伸因子()( = 40)、β-微管蛋白(BT)( = 40)、大核糖体亚基(LSU)( = 34)、钙调蛋白(CAL)( = 29)、高迁移率族()转录因子基因( = 17)和α-盒基因( = 17)进行了测序。我们的序列与NCBI数据库中的 物种复合序列进行了比较。除了一个来自动物源的分离株(ITS基因型III)外,所有测试基因都将我们的分离株归为一组,属于目前标记为 的“印度ITS基因型”。与其他基因相比,ITS和 更为一致。在本研究中,我们首次从动物源分离出 ITS VIII型,这表明人畜共患传播在当前疫情中的作用。仅从动物中分离出III型表明其在动物中的生态位。公共数据库中这些皮肤癣菌过时/不准确的命名在使用适当的物种名称时造成了混乱。

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