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急性低氧应激下鳃的转录组分析

Transcriptomic Analysis of Gills under Acute Hypoxic Stress.

作者信息

Zhang Huakun, Li Run, Wang Yaohui, Zhou Jinxu, Xu Hao, Gou Meng, Ye Jianhua, Qiu Xuemei, Wang Xiuli

机构信息

College of Fisheries and Life Science, Dalian Ocean University, Dalian 116023, China.

Key Laboratory of Pufferfish Breeding and Culture in Liaoning Province, Dalian Ocean University, Dalian 116023, China.

出版信息

Animals (Basel). 2023 May 9;13(10):1572. doi: 10.3390/ani13101572.

DOI:10.3390/ani13101572
PMID:37238005
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10215208/
Abstract

has relatively small gills and gill pores, leading to a relatively low respiratory capacity and increased vulnerability to low dissolved oxygen (DO) levels compared to other fish. To investigate the responses of to acute hypoxic stress, high-throughput-sequencing-based transcriptomic analyses were conducted here to assess the responses of gills to acute hypoxic stress. Three environmental conditions were compared including normoxia (DO: 7.0 ± 0.2 mg/L), hypoxic stress (DO: 0.9 ± 0.2 mg/L), and reoxygenation (4, 8, 12, and 24 h after return to normoxia) conditions to identify differentially expressed genes (DEGs) responsive to hypoxia. A total of 992, 877, 1561, 1412, and 679 DEGs were identified in the normoxia and reoxygenation for 4, 8, 12, and 24 h groups in comparison to the hypoxia groups, respectively. The DEGs were primarily associated with oxidative stress, growth and development, and immune responses. Further functional annotation enrichment analysis of the DEGs revealed that they were primarily related to cytokine-cytokine interactions, transforming growth factor β receptor (TGF-β), cell adhesion molecules (CAMs), the vascular endothelial growth factor (VEGF) signaling pathway, and the mitogen-activated protein kinase (MAPK) signaling pathway. These results provide new insights into the physiological and biochemical mechanisms of adaptations to hypoxic stress. Furthermore, these results provide a framework for future studies into the molecular mechanisms of hypoxia tolerance and the healthy culture of and other fish.

摘要

具有相对较小的鳃和鳃孔,与其他鱼类相比,导致呼吸能力相对较低,并且对低溶解氧(DO)水平的脆弱性增加。为了研究[鱼的种类未明确]对急性缺氧应激的反应,在此进行了基于高通量测序的转录组分析,以评估[鱼的种类未明确]鳃对急性缺氧应激的反应。比较了三种环境条件,包括常氧(DO:7.0±0.2mg/L)、缺氧应激(DO:0.9±0.2mg/L)和复氧(恢复常氧后4、8、12和24小时)条件,以鉴定对缺氧有反应的差异表达基因(DEG)。与缺氧组相比,在常氧组以及复氧4、8、12和24小时组中分别鉴定出992、877、1561、1412和679个DEG。这些DEG主要与氧化应激、生长发育和免疫反应相关。对DEG的进一步功能注释富集分析表明,它们主要与细胞因子-细胞因子相互作用、转化生长因子β受体(TGF-β)、细胞粘附分子(CAM)、血管内皮生长因子(VEGF)信号通路和丝裂原活化蛋白激酶(MAPK)信号通路有关。这些结果为[鱼的种类未明确]适应缺氧应激的生理和生化机制提供了新的见解。此外,这些结果为未来研究缺氧耐受性的分子机制以及[鱼的种类未明确]和其他鱼类的健康养殖提供了框架。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/03ac/10215208/2b5822bad45b/animals-13-01572-g003a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/03ac/10215208/52cbacb9ce09/animals-13-01572-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/03ac/10215208/7f7c264b2551/animals-13-01572-g002a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/03ac/10215208/2b5822bad45b/animals-13-01572-g003a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/03ac/10215208/52cbacb9ce09/animals-13-01572-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/03ac/10215208/7f7c264b2551/animals-13-01572-g002a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/03ac/10215208/2b5822bad45b/animals-13-01572-g003a.jpg

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本文引用的文献

1
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Int J Mol Sci. 2021 Jan 15;22(2):843. doi: 10.3390/ijms22020843.
2
Cardiac Transcriptomics Reveals That MAPK Pathway Plays an Important Role in Hypoxia Tolerance in Bighead Carp ().心脏转录组学研究表明,丝裂原活化蛋白激酶(MAPK)信号通路在鳙鱼耐低氧过程中发挥重要作用。
Animals (Basel). 2020 Aug 24;10(9):1483. doi: 10.3390/ani10091483.
3
Glucocorticoid-transactivated TSC22D3 attenuates hypoxia- and diabetes-induced Müller glial galectin-1 expression via HIF-1α destabilization.
糖皮质激素激活的 TSC22D3 通过 HIF-1α 失稳来减轻低氧和糖尿病诱导的 Müller 胶质细胞半乳糖凝集素-1 的表达。
J Cell Mol Med. 2020 Apr;24(8):4589-4599. doi: 10.1111/jcmm.15116. Epub 2020 Mar 9.
4
Mitogen-activated protein kinase phosphatase 1 (MKP-1) in macrophage biology and cardiovascular disease. A redox-regulated master controller of monocyte function and macrophage phenotype.丝裂原活化蛋白激酶磷酸酶1(MKP-1)在巨噬细胞生物学和心血管疾病中的作用。一种氧化还原调节的单核细胞功能和巨噬细胞表型的主要调控因子。
Free Radic Biol Med. 2017 Aug;109:75-83. doi: 10.1016/j.freeradbiomed.2017.03.020. Epub 2017 Mar 19.
5
External factors influencing mesenchymal stem cell fate in vitro.体外影响间充质干细胞命运的外部因素。
Eur J Cell Biol. 2017 Jan;96(1):13-33. doi: 10.1016/j.ejcb.2016.11.003. Epub 2016 Dec 5.
6
Warm acclimation improves hypoxia tolerance in Fundulus heteroclitus.温暖驯化提高了底鳉的耐缺氧能力。
J Exp Biol. 2016 Feb;219(Pt 4):474-84. doi: 10.1242/jeb.133413.
7
The prognostic value of combined TGF-β1 and ELF in hepatocellular carcinoma.转化生长因子-β1(TGF-β1)与ELF联合检测在肝细胞癌中的预后价值
BMC Cancer. 2015 Mar 11;15:116. doi: 10.1186/s12885-015-1127-y.
8
Neurotoxicological effects on marine mussel Mytilus galloprovincialis caged at petrochemical contaminated areas (eastern Sicily, Italy): ¹H NMR and immunohistochemical assays.对养殖于石化污染区域(意大利西西里岛东部)的地中海贻贝的神经毒理学影响:¹H NMR和免疫组织化学分析
Comp Biochem Physiol C Toxicol Pharmacol. 2015 Mar;169:7-15. doi: 10.1016/j.cbpc.2014.12.006. Epub 2015 Jan 6.
9
Transcriptional regulation of hypoxia inducible factors alpha (HIF-α) and their inhibiting factor (FIH-1) of channel catfish (Ictalurus punctatus) under hypoxia.缺氧诱导因子α(HIF-α)及其抑制因子(FIH-1)在缺氧条件下对斑点叉尾鮰(Ictalurus punctatus)的转录调控。
Comp Biochem Physiol B Biochem Mol Biol. 2014 Mar;169:38-50. doi: 10.1016/j.cbpb.2013.12.007. Epub 2013 Dec 31.
10
BAMBI regulates angiogenesis and endothelial homeostasis through modulation of alternative TGFβ signaling.BAMBI 通过调节替代性 TGFβ 信号来调节血管生成和血管内皮细胞稳态。
PLoS One. 2012;7(6):e39406. doi: 10.1371/journal.pone.0039406. Epub 2012 Jun 25.