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全基因组 DNA 甲基化分析鉴定的新型差异甲基化区域导致儿童肥胖的种族差异。

Novel Differentially Methylated Regions Identified by Genome-Wide DNA Methylation Analyses Contribute to Racial Disparities in Childhood Obesity.

机构信息

Department of Nutritional Sciences, Auburn University, Auburn, AL 36849, USA.

Boshell Metabolic Diseases and Diabetes Program, Auburn University, Auburn, AL 36849, USA.

出版信息

Genes (Basel). 2023 May 17;14(5):1098. doi: 10.3390/genes14051098.

Abstract

The magnitude of the childhood obesity epidemic and its effects on public health has accelerated the pursuit of practical preventative measures. Epigenetics is one subject that holds a lot of promise, despite being relatively new. The study of potentially heritable variations in gene expression that do not require modifications to the underlying DNA sequence is known as epigenetics. Here, we used Illumina MethylationEPIC BeadChip Array to identify differentially methylated regions in DNA isolated from saliva between normal weight (NW) and overweight/obese (OW/OB) children and between European American (EA) and African American (AA) children. A total of 3133 target IDs (associated with 2313 genes) were differentially methylated ( < 0.05) between NW and OW/OB children. In OW/OB children, 792 target IDs were hypermethylated and 2341 were hypomethylated compared to NW. Similarly, in the racial groups EA and AA, a total of 1239 target IDs corresponding to 739 genes were significantly differentially methylated in which 643 target IDs were hypermethylated and 596 were hypomethylated in the AA compared to EA participants. Along with this, the study identified novel genes that could contribute to the epigenetic regulation of childhood obesity.

摘要

儿童肥胖症的严重性及其对公共健康的影响加速了对实用预防措施的追求。表观遗传学是一个很有前途的研究领域,尽管它相对较新。表观遗传学是指研究基因表达的潜在可遗传性变化,而这些变化不需要对基础 DNA 序列进行修饰。在这里,我们使用 Illumina MethylationEPIC BeadChip Array 技术,在唾液中分离的 DNA 中识别出正常体重(NW)和超重/肥胖(OW/OB)儿童以及欧洲裔美国人(EA)和非裔美国人(AA)儿童之间的差异甲基化区域。在 NW 和 OW/OB 儿童之间,共有 3133 个靶标 ID(与 2313 个基因相关)发生了差异甲基化(<0.05)。与 NW 相比,OW/OB 儿童中有 792 个靶标 ID 呈高甲基化,2341 个靶标 ID 呈低甲基化。同样,在 EA 和 AA 这两个种族群体中,共有 1239 个靶标 ID(与 739 个基因相对应)发生了显著的差异甲基化,其中 AA 参与者中 643 个靶标 ID 呈高甲基化,596 个靶标 ID 呈低甲基化。此外,该研究还鉴定了一些新的基因,这些基因可能有助于儿童肥胖症的表观遗传调控。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bbe8/10218285/1820ef67ea25/genes-14-01098-g001.jpg

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