Zhu Honghui, Lin Qi, Gao Xiaomin, Huang Xixi
Department of Urology, The First Affiliated Hospital of Wenzhou Medical University, Wenzhou, China.
Front Oncol. 2023 May 12;13:1168772. doi: 10.3389/fonc.2023.1168772. eCollection 2023.
INTRODUCTION: Prostate cancer (PCa) is one of the most common malignant tumors of the male urogenital system; however, the underlying mechanisms remain largely unclear. This study integrated two cohort profile datasets to elucidate the potential hub genes and mechanisms in PCa. METHODS AND RESULTS: Gene expression profiles GSE55945 and GSE6919 were filtered from the Gene Expression Omnibus (GEO) database to obtain 134 differentially expressed genes (DEGs) (14 upregulated and 120 downregulated) in PCa. Gene Ontology and pathway enrichment were performed using the Database for Annotation, Visualization, and Integrated Discovery, showing that these DEGs were mainly involved in biological functions such as cell adhesion, extracellular matrix, migration, focal adhesion, and vascular smooth muscle contraction. The STRING database and Cytoscape tools were used to analyze protein-protein interactions and identify 15 hub candidate genes. Violin plot, boxplot, and prognostic curve analyses were performed using Gene Expression Profiling Interactive Analysis, which identified seven hub genes, including upregulated expressed SPP1 and downregulated expressed MYLK, MYL9, MYH11, CALD1, ACTA2, and CNN1 in PCa compared with normal tissue. Correlation analysis was performed using the OmicStudio tools, which showed that these hub genes were moderately to strongly correlated with each other. Finally, quantitative reverse transcription PCR and western blotting were performed to validate the hub genes, showing that the abnormal expression of the seven hub genes in PCa was consistent with the analysis results of the GEO database. DISCUSSION: Taken together, MYLK, MYL9, MYH11, CALD1, ACTA2, SPP1, and CNN1 are hub genes significantly associated with PCa occurrence. These genes are abnormally expressed, leading to the formation, proliferation, invasion, and migration of PCa cells and promoting tumor neovascularization. These genes may serve as potential biomarkers and therapeutic targets in patients with PCa.
引言:前列腺癌(PCa)是男性泌尿生殖系统最常见的恶性肿瘤之一;然而,其潜在机制在很大程度上仍不清楚。本研究整合了两个队列概况数据集,以阐明PCa中的潜在枢纽基因和机制。 方法与结果:从基因表达综合数据库(GEO)中筛选出基因表达谱GSE55945和GSE6919,以获得PCa中134个差异表达基因(DEG)(14个上调和120个下调)。使用注释、可视化和综合发现数据库进行基因本体论和通路富集分析,结果表明这些DEG主要参与细胞黏附、细胞外基质、迁移、黏着斑和血管平滑肌收缩等生物学功能。使用STRING数据库和Cytoscape工具分析蛋白质-蛋白质相互作用,并鉴定出15个枢纽候选基因。使用基因表达谱交互式分析进行小提琴图、箱线图和预后曲线分析,确定了7个枢纽基因,包括PCa中与正常组织相比上调表达的SPP1和下调表达的MYLK、MYL9、MYH11、CALD1、ACTA2和CNN1。使用OmicStudio工具进行相关性分析,结果表明这些枢纽基因彼此之间呈中度至高度相关。最后,进行定量逆转录PCR和蛋白质免疫印迹以验证枢纽基因,结果表明PCa中7个枢纽基因的异常表达与GEO数据库的分析结果一致。 讨论:综上所述,MYLK、MYL9、MYH11、CALD1、ACTA2、SPP1和CNN1是与PCa发生显著相关的枢纽基因。这些基因异常表达,导致PCa细胞的形成、增殖、侵袭和迁移,并促进肿瘤新生血管形成。这些基因可能作为PCa患者的潜在生物标志物和治疗靶点。
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