文献检索文档翻译深度研究
Suppr Zotero 插件Zotero 插件
邀请有礼套餐&价格历史记录

新学期,新优惠

限时优惠:9月1日-9月22日

30天高级会员仅需29元

1天体验卡首发特惠仅需5.99元

了解详情
不再提醒
插件&应用
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
高级版
套餐订阅购买积分包
AI 工具
文献检索文档翻译深度研究
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2025

与前列腺癌发生相关的枢纽基因的鉴定。

Identification of the hub genes associated with prostate cancer tumorigenesis.

作者信息

Zhu Honghui, Lin Qi, Gao Xiaomin, Huang Xixi

机构信息

Department of Urology, The First Affiliated Hospital of Wenzhou Medical University, Wenzhou, China.

出版信息

Front Oncol. 2023 May 12;13:1168772. doi: 10.3389/fonc.2023.1168772. eCollection 2023.


DOI:10.3389/fonc.2023.1168772
PMID:37251946
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10213256/
Abstract

INTRODUCTION: Prostate cancer (PCa) is one of the most common malignant tumors of the male urogenital system; however, the underlying mechanisms remain largely unclear. This study integrated two cohort profile datasets to elucidate the potential hub genes and mechanisms in PCa. METHODS AND RESULTS: Gene expression profiles GSE55945 and GSE6919 were filtered from the Gene Expression Omnibus (GEO) database to obtain 134 differentially expressed genes (DEGs) (14 upregulated and 120 downregulated) in PCa. Gene Ontology and pathway enrichment were performed using the Database for Annotation, Visualization, and Integrated Discovery, showing that these DEGs were mainly involved in biological functions such as cell adhesion, extracellular matrix, migration, focal adhesion, and vascular smooth muscle contraction. The STRING database and Cytoscape tools were used to analyze protein-protein interactions and identify 15 hub candidate genes. Violin plot, boxplot, and prognostic curve analyses were performed using Gene Expression Profiling Interactive Analysis, which identified seven hub genes, including upregulated expressed SPP1 and downregulated expressed MYLK, MYL9, MYH11, CALD1, ACTA2, and CNN1 in PCa compared with normal tissue. Correlation analysis was performed using the OmicStudio tools, which showed that these hub genes were moderately to strongly correlated with each other. Finally, quantitative reverse transcription PCR and western blotting were performed to validate the hub genes, showing that the abnormal expression of the seven hub genes in PCa was consistent with the analysis results of the GEO database. DISCUSSION: Taken together, MYLK, MYL9, MYH11, CALD1, ACTA2, SPP1, and CNN1 are hub genes significantly associated with PCa occurrence. These genes are abnormally expressed, leading to the formation, proliferation, invasion, and migration of PCa cells and promoting tumor neovascularization. These genes may serve as potential biomarkers and therapeutic targets in patients with PCa.

摘要

引言:前列腺癌(PCa)是男性泌尿生殖系统最常见的恶性肿瘤之一;然而,其潜在机制在很大程度上仍不清楚。本研究整合了两个队列概况数据集,以阐明PCa中的潜在枢纽基因和机制。 方法与结果:从基因表达综合数据库(GEO)中筛选出基因表达谱GSE55945和GSE6919,以获得PCa中134个差异表达基因(DEG)(14个上调和120个下调)。使用注释、可视化和综合发现数据库进行基因本体论和通路富集分析,结果表明这些DEG主要参与细胞黏附、细胞外基质、迁移、黏着斑和血管平滑肌收缩等生物学功能。使用STRING数据库和Cytoscape工具分析蛋白质-蛋白质相互作用,并鉴定出15个枢纽候选基因。使用基因表达谱交互式分析进行小提琴图、箱线图和预后曲线分析,确定了7个枢纽基因,包括PCa中与正常组织相比上调表达的SPP1和下调表达的MYLK、MYL9、MYH11、CALD1、ACTA2和CNN1。使用OmicStudio工具进行相关性分析,结果表明这些枢纽基因彼此之间呈中度至高度相关。最后,进行定量逆转录PCR和蛋白质免疫印迹以验证枢纽基因,结果表明PCa中7个枢纽基因的异常表达与GEO数据库的分析结果一致。 讨论:综上所述,MYLK、MYL9、MYH11、CALD1、ACTA2、SPP1和CNN1是与PCa发生显著相关的枢纽基因。这些基因异常表达,导致PCa细胞的形成、增殖、侵袭和迁移,并促进肿瘤新生血管形成。这些基因可能作为PCa患者的潜在生物标志物和治疗靶点。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/05fe/10213256/16ada95db2ed/fonc-13-1168772-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/05fe/10213256/5f5e20a8d224/fonc-13-1168772-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/05fe/10213256/e524f75d5e62/fonc-13-1168772-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/05fe/10213256/2ae510afde81/fonc-13-1168772-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/05fe/10213256/70300f5526a0/fonc-13-1168772-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/05fe/10213256/5e84ccb53e21/fonc-13-1168772-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/05fe/10213256/bf457fa56906/fonc-13-1168772-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/05fe/10213256/16ada95db2ed/fonc-13-1168772-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/05fe/10213256/5f5e20a8d224/fonc-13-1168772-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/05fe/10213256/e524f75d5e62/fonc-13-1168772-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/05fe/10213256/2ae510afde81/fonc-13-1168772-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/05fe/10213256/70300f5526a0/fonc-13-1168772-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/05fe/10213256/5e84ccb53e21/fonc-13-1168772-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/05fe/10213256/bf457fa56906/fonc-13-1168772-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/05fe/10213256/16ada95db2ed/fonc-13-1168772-g007.jpg

相似文献

[1]
Identification of the hub genes associated with prostate cancer tumorigenesis.

Front Oncol. 2023-5-12

[2]
Identification of key genes and multiple molecular pathways of metastatic process in prostate cancer.

PeerJ. 2019-10-17

[3]
[Bioinformatics-based identification of the key genes associated with prostate cancer].

Zhonghua Nan Ke Xue. 2021-6

[4]
Integrated Network Analysis to Determine CNN1, MYL9, TAGLN, and SORBS1 as Potential Key Genes Associated with Prostate Cancer.

Clin Lab. 2023-7-1

[5]
Identification of prostate cancer hub genes and therapeutic agents using bioinformatics approach.

Cancer Biomark. 2017-12-6

[6]
Identification of candidate hub genes correlated with the pathogenesis, diagnosis, and prognosis of prostate cancer by integrated bioinformatics analysis.

Transl Cancer Res. 2022-10

[7]
Bioinformatics analysis identified hub genes in prostate cancer tumorigenesis and metastasis.

Math Biosci Eng. 2021-4-6

[8]
Identification of hub genes predicting the development of prostate cancer from benign prostate hyperplasia and analyzing their clinical value in prostate cancer by bioinformatic analysis.

Discov Oncol. 2022-6-30

[9]
Combined analysis and validation for DNA methylation and gene expression profiles associated with prostate cancer.

Cancer Cell Int. 2019-3-4

[10]
Identification of key candidate genes and biological pathways in bladder cancer.

PeerJ. 2018-12-4

引用本文的文献

[1]
DiCE: differential centrality-ensemble analysis based on gene expression profiles and protein-protein interaction network.

Nucleic Acids Res. 2025-7-8

[2]
AGTR1: a potential biomarker associated with the occurrence and prognosis of lung adenocarcinoma.

Front Oncol. 2024-10-10

[3]
Comprehensive data mining reveals RTK/RAS signaling pathway as a promoter of prostate cancer lineage plasticity through transcription factors and CNV.

Sci Rep. 2024-5-22

[4]
In vitro combination effects of plant-derived quercetin with synthetic bicalutamide on prostate cancer and normal cell lines: in silico comparison.

In Silico Pharmacol. 2024-3-29

[5]
FLRT3 and TGF-β/SMAD4 signalling: Impacts on apoptosis, autophagy and ion channels in supraventricular tachycardia.

J Cell Mol Med. 2024-4

本文引用的文献

[1]
Calponin 1 increases cancer-associated fibroblasts-mediated matrix stiffness to promote chemoresistance in gastric cancer.

Matrix Biol. 2023-1

[2]
Osteoglycin: An ECM Factor Regulating Fibrosis and Tumorigenesis.

Biomolecules. 2022-11-11

[3]
The Gene Expression Landscape of Prostate Cancer BM Reveals Close Interaction with the Bone Microenvironment.

Int J Mol Sci. 2022-10-27

[4]
Androgen receptor variant-7 regulation by tenascin-c induced src activation.

Cell Commun Signal. 2022-8-10

[5]
Integrative Analysis of Bulk RNA-Seq and Single-Cell RNA-Seq Unveils the Characteristics of the Immune Microenvironment and Prognosis Signature in Prostate Cancer.

J Oncol. 2022-7-19

[6]
Ang2-Targeted Combination Therapy for Cancer Treatment.

Front Immunol. 2022

[7]
Functions and mechanisms of N6‑methyladenosine in prostate cancer (Review).

Mol Med Rep. 2022-9

[8]
Identification of hub genes predicting the development of prostate cancer from benign prostate hyperplasia and analyzing their clinical value in prostate cancer by bioinformatic analysis.

Discov Oncol. 2022-6-30

[9]
The Extracellular Matrix Stiffening: A Trigger of Prostate Cancer Progression and Castration Resistance?

Cancers (Basel). 2022-6-11

[10]
TGF-β-Induced FLRT3 Attenuation Is Essential for Cancer-Associated Fibroblast-Mediated Epithelial-Mesenchymal Transition in Colorectal Cancer.

Mol Cancer Res. 2022-8-5

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

推荐工具

医学文档翻译智能文献检索