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亚群C1分枝杆菌噬菌体Blackbrain、Cactojaque、Kboogie、Trinitium和YoungMoneyMata的全基因组序列

Complete Genome Sequences of Subcluster C1 Mycobacteriophages Blackbrain, Cactojaque, Kboogie, Trinitium, and YoungMoneyMata.

作者信息

Moore Madison M, Ayuk Mary A, Johnson Amber A, Sims Triniti, Haamen Sanaa, Haidara Ramata, Allen Adrian D, Dickson Leon A, Ghosh Somiranjan, Gugssa Ayele, Ullah Hemayet, Bassey Glory B, Fernando Lourds M, London Laricca Y, Irabor Esohe G, Roy Swagota D, Quagraine Benedict K, Smith Michael, Anderson Winston A, Robinson Courtney J

机构信息

Department of Biology, Howard University, Washington, DC, USA.

Department of Biological and Environmental Sciences, Alabama A&M University, Normal, Alabama, USA.

出版信息

Microbiol Resour Announc. 2023 Jun 20;12(6):e0025323. doi: 10.1128/mra.00253-23. Epub 2023 May 31.

DOI:10.1128/mra.00253-23
PMID:37255446
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10281172/
Abstract

Five subcluster C1 mycobacteriophages, Blackbrain, Cactojaque, Kboogie, Trinitium, and YoungMoneyMata, were isolated from soil using the host Mycobacterium smegmatis mc155. The genome sizes range from 154,512 to 156,223 bp. The largest genome encodes 237 predicted proteins, 34 tRNAs, and 1 transfer-messenger RNA (tmRNA).

摘要

使用耻垢分枝杆菌mc155作为宿主,从土壤中分离出了五个亚群C1分枝杆菌噬菌体,即Blackbrain、Cactojaque、Kboogie、Trinitium和YoungMoneyMata。基因组大小在154,512至156,223 bp之间。最大的基因组编码237个预测蛋白、34个tRNA和1个转移信使RNA(tmRNA)。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d64d/10281172/d8b65739f815/mra.00253-23-f001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d64d/10281172/d8b65739f815/mra.00253-23-f001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d64d/10281172/d8b65739f815/mra.00253-23-f001.jpg

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本文引用的文献

1
STAT: a fast, scalable, MinHash-based k-mer tool to assess Sequence Read Archive next-generation sequence submissions.STAT:一种快速、可扩展的基于 MinHash 的 k-mer 工具,用于评估 Sequence Read Archive 下一代序列提交。
Genome Biol. 2021 Sep 20;22(1):270. doi: 10.1186/s13059-021-02490-0.
2
Complete Genome Sequences of Mycobacteriophages Dallas and Jonghyun.分枝杆菌噬菌体达拉斯和钟铉的全基因组序列
Microbiol Resour Announc. 2021 Jul 8;10(27):e0030421. doi: 10.1128/MRA.00304-21.
3
Sequencing, Assembling, and Finishing Complete Bacteriophage Genomes.
完整噬菌体基因组的测序、组装与完成
Methods Mol Biol. 2018;1681:109-125. doi: 10.1007/978-1-4939-7343-9_9.
4
PhagesDB: the actinobacteriophage database.噬菌体数据库:放线菌噬菌体数据库。
Bioinformatics. 2017 Mar 1;33(5):784-786. doi: 10.1093/bioinformatics/btw711.
5
CDD: NCBI's conserved domain database.CDD:美国国家生物技术信息中心的保守结构域数据库。
Nucleic Acids Res. 2015 Jan;43(Database issue):D222-6. doi: 10.1093/nar/gku1221. Epub 2014 Nov 20.
6
A broadly implementable research course in phage discovery and genomics for first-year undergraduate students.一门面向本科一年级学生的、可广泛实施的噬菌体发现与基因组学研究课程。
mBio. 2014 Feb 4;5(1):e01051-13. doi: 10.1128/mBio.01051-13.
7
Consed: a graphical editor for next-generation sequencing.Consed:下一代测序的图形编辑器。
Bioinformatics. 2013 Nov 15;29(22):2936-7. doi: 10.1093/bioinformatics/btt515. Epub 2013 Aug 31.
8
Phamerator: a bioinformatic tool for comparative bacteriophage genomics.Phamerator:一种用于比较噬菌体基因组学的生物信息学工具。
BMC Bioinformatics. 2011 Oct 12;12:395. doi: 10.1186/1471-2105-12-395.
9
Comparative genomic analysis of 60 Mycobacteriophage genomes: genome clustering, gene acquisition, and gene size.60 株分枝杆菌噬菌体基因组的比较基因组分析:基因组聚类、基因获得和基因大小。
J Mol Biol. 2010 Mar 19;397(1):119-43. doi: 10.1016/j.jmb.2010.01.011. Epub 2010 Jan 11.
10
Identifying bacterial genes and endosymbiont DNA with Glimmer.使用Glimmer识别细菌基因和内共生体DNA。
Bioinformatics. 2007 Mar 15;23(6):673-9. doi: 10.1093/bioinformatics/btm009. Epub 2007 Jan 19.