School of Chemistry and Biochemistry, Georgia Institute of Technology, Atlanta, GA, USA.
Parker Petit Institute for Bioengineering and Biosciences, Atlanta, GA, USA.
Methods Mol Biol. 2023;2675:219-236. doi: 10.1007/978-1-0716-3247-5_17.
Glyceraldehyde phosphate dehydrogenase (GAPDH) is a highly conserved, essential, and abundant enzyme that catalyzes a rate-determining step of glycolysis. GAPDH catalyzes the nicotinamide adenine dinucleotide (NAD)- and inorganic phosphate-dependent oxidation and phosphorylation of glyceraldehyde phosphate (GAP) to form 1,3-bisphosphoglycerate (BPG). As part of its mechanism of action, GAPDH employs a redox-sensitive cysteine that serves as a nucleophile to form a covalent adduct with GAP in order to set-up subsequent oxidation and phosphorylation steps. As a result of the redox sensitivity of the active site cysteine residue, GAPDH is susceptible to oxidative inactivation by oxidants such as hydrogen peroxide (HO). Indeed, numerous studies have demonstrated that oxidative inactivation of GAPDH has important metabolic consequences for adaptation to life in air and oxidative stress since decreased GAPDH activity results in the rerouting of carbon flux away from glycolysis and toward the pentose phosphate pathway to produce the key cellular reductant and antioxidant, NADPH. Thus, the ability to probe GAPDH oxidation and activity provides an important snapshot of the intracellular redox environment and glycolytic flux. Herein, we describe methods to measure reduced and oxidized GAPDH using thiol alkylation assays as well as GAPDH enzymatic activity.
甘油醛-3-磷酸脱氢酶(GAPDH)是一种高度保守、必需且丰富的酶,它催化糖酵解的限速步骤。GAPDH 催化烟酰胺腺嘌呤二核苷酸(NAD)和无机磷酸依赖性甘油醛-3-磷酸(GAP)的氧化和磷酸化,形成 1,3-二磷酸甘油酸(BPG)。作为其作用机制的一部分,GAPDH 利用一个氧化还原敏感的半胱氨酸作为亲核试剂与 GAP 形成共价加合物,以启动后续的氧化和磷酸化步骤。由于活性位点半胱氨酸残基的氧化还原敏感性,GAPDH 容易受到氧化剂如过氧化氢(HO)的氧化失活。事实上,许多研究表明,GAPDH 的氧化失活对适应空气中的生活和氧化应激具有重要的代谢后果,因为 GAPDH 活性的降低会导致碳通量从糖酵解重新分配到戊糖磷酸途径,以产生关键的细胞还原剂和抗氧化剂 NADPH。因此,探测 GAPDH 氧化和活性的能力提供了细胞内氧化还原环境和糖酵解通量的重要快照。在此,我们描述了使用巯基烷基化测定法测量还原型和氧化型 GAPDH 的方法,以及 GAPDH 酶活性的测定方法。