Palladin Institute of Biochemistry of the National Academy of Sciences of Ukraine, 9 Leontovicha Street, Kyiv, 01054, Ukraine.
Biochimie. 2023 Nov;214(Pt B):11-26. doi: 10.1016/j.biochi.2023.06.001. Epub 2023 Jun 4.
The effect of reversible modifiers on the initial rate of enzyme catalysed reactions has been investigated in a quasi-equilibrium approximation using the general modifier mechanism of Botts and Morales. It has been shown that, when investigating the dependence of the initial rate on the modifier concentration at a fixed substrate concentration, the kinetics of enzyme titration by reversible modifiers can generally be described using two kinetic constants. Just as the dependence of the initial rate on the substrate concentration (at a fixed modifier concentration) is described using two kinetic constants: the Michaelis constant K and the limiting rate V. Only one constant M is needed to describe the kinetics of linear inhibition, and in the case of nonlinear inhibition and activation, along with M the constant Q is also needed. Knowing the values of the constants M and Q, it is possible to unambiguously determine the modification efficiency, that is, to calculate how many times the initial rate of the enzyme catalysed reaction will change when a certain modifier concentration is added to the incubation medium. The properties of these fundamental constants have been analysed in detail and the dependence of these constants on other parameters of the Botts-Morales model have been shown. Equations describing the dependence of relative reaction rates on the modifier concentration using these kinetic constants are presented. Various ways of linearising these equations for calculating the kinetic constants M and Q from experimental data are also presented.
采用 Botts 和 Morales 的通用修饰剂机制,在准平衡近似下研究了可逆修饰剂对酶催化反应初始速率的影响。结果表明,在固定底物浓度下研究初始速率对修饰剂浓度的依赖性时,可逆修饰剂对酶滴定的动力学通常可以用两个动力学常数来描述。正如初始速率对底物浓度(在固定修饰剂浓度下)的依赖性可以用两个动力学常数来描述:米氏常数 K 和极限速率 V。线性抑制的动力学仅需要一个常数 M 来描述,而在非线性抑制和激活的情况下,除了 M 之外,还需要常数 Q。知道常数 M 和 Q 的值,就可以明确地确定修饰效率,也就是说,可以计算出当向孵育介质中添加一定浓度的修饰剂时,酶催化反应的初始速率将改变多少倍。详细分析了这些基本常数的性质,并显示了这些常数与 Botts-Morales 模型其他参数的关系。还提出了用这些动力学常数描述相对反应速率对修饰剂浓度依赖性的方程。还提出了从实验数据计算常数 M 和 Q 的各种线性化方法。