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新型荧光苯并噻唑基-香豆素杂化物作为抗SARS-CoV-2药物的分子对接研究支持:设计、合成、X射线晶体结构、DFT和TD-DFT/PCM计算

Novel Fluorescent Benzothiazolyl-Coumarin Hybrids as Anti-SARS-COVID-2 Agents Supported by Molecular Docking Studies: Design, Synthesis, X-ray Crystal Structures, DFT, and TD-DFT/PCM Calculations.

作者信息

Abdallah Amira E M, Abdel-Latif Samir A, Elgemeie Galal H

机构信息

Department of Chemistry, Faculty of Science, Helwan University, 11795 Cairo, Egypt.

出版信息

ACS Omega. 2023 May 23;8(22):19587-19602. doi: 10.1021/acsomega.3c01085. eCollection 2023 Jun 6.

Abstract

This study revealed the design and preparation of new 3-(benzo[]thiazol-2-yl)-2-chromen-2-one derivatives . The structures of the synthesized products were elucidated by their spectroscopic data and X-ray crystallography for compounds and . The prepared new compounds were measured for their fluorescence, and a good result indicated that the emission efficiency was decreased by increasing the electron-withdrawing groups from the unsubstituted compound to the highly substituted derivative (2 Br heavy atoms). On the other hand, the B3LYP/6-311G** theoretical level of theory was used to optimize the quantum mechanical calculations of the geometrical characteristics and energy of the novel compounds under study. The electronic transition was investigated using the TD-DFT/PCM B3LYP approach, which uses time-dependent density functional calculations. Moreover, the compounds exhibited nonlinear optical properties (NLO) and a small HOMO-LUMO energy gap, which makes them easy to polarize. Furthermore, the acquired infrared spectra were compared with the expected harmonic vibrations of the substances . On the other hand, binding energy analyses of compounds with human corona virus nucleocapsid protein Nl63 (PDB ID: 5epw) were predicted using molecular docking and virtual screening tools. The results showed a promising binding and how these potent compounds were inhibiting the COVID-19 virus. Compound was the most active anti-COVID-19 agent among all the synthesized benzothiazolyl-coumarin derivatives, as it forms five bonds. The presence of the two bromine atoms in its structure was responsible for the potent activity.

摘要

本研究揭示了新型3-(苯并[]噻唑-2-基)-2-色烯-2-酮衍生物的设计与制备。通过光谱数据以及化合物 和 的X射线晶体学对合成产物的结构进行了阐明。对制备的新化合物进行了荧光测定,结果表明,从未取代的化合物 到高取代衍生物 (含有2个溴重原子),随着吸电子基团的增加,发射效率降低。另一方面,使用B3LYP/6-311G**理论水平对所研究的新型化合物 的几何特征和能量进行量子力学计算优化。采用TD-DFT/PCM B3LYP方法(即含时密度泛函计算)研究电子跃迁。此外,这些化合物表现出非线性光学性质(NLO)且HOMO-LUMO能隙较小,这使得它们易于极化。此外,将获得的红外光谱与物质 的预期简正振动进行了比较。另一方面,使用分子对接和虚拟筛选工具预测了化合物 与人冠状病毒核衣壳蛋白Nl63(PDB ID:5epw)的结合能分析。结果显示出有前景的结合情况以及这些强效化合物如何抑制COVID-19病毒。化合物 是所有合成的苯并噻唑基香豆素衍生物中最具活性的抗COVID-19药物,因为它形成了五个键。其结构中两个溴原子的存在导致了强效活性。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/26a8/10249035/9adc17f30414/ao3c01085_0002.jpg

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