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全基因组测序揭示了在多重耐药菌株中能够传递和获得抗微生物耐药性及高毒力决定因素的融合质粒。

Whole-Genome Sequencing Revealed the Fusion Plasmids Capable of Transmission and Acquisition of Both Antimicrobial Resistance and Hypervirulence Determinants in Multidrug-Resistant Isolates.

作者信息

Shelenkov Andrey, Mikhaylova Yulia, Voskanyan Shushanik, Egorova Anna, Akimkin Vasiliy

机构信息

Central Research Institute of Epidemiology, Novogireevskaya Str., 3a, 111123 Moscow, Russia.

出版信息

Microorganisms. 2023 May 17;11(5):1314. doi: 10.3390/microorganisms11051314.

Abstract

, a member of the family, has become a dangerous pathogen accountable for a large fraction of the various infectious diseases in both clinical and community settings. In general, the population has been divided into the so-called classical (cKp) and hypervirulent (hvKp) lineages. The former, usually developing in hospitals, can rapidly acquire resistance to a wide spectrum of antimicrobial drugs, while the latter is associated with more aggressive but less resistant infections, mostly in healthy humans. However, a growing number of reports in the last decade have confirmed the convergence of these two distinct lineages into superpathogen clones possessing the properties of both, and thus imposing a significant threat to public health worldwide. This process is associated with horizontal gene transfer, in which plasmid conjugation plays a very important role. Therefore, the investigation of plasmid structures and the ways plasmids spread within and between bacterial species will provide benefits in developing prevention measures against these powerful pathogens. In this work, we investigated clinical multidrug-resistant isolates using long- and short-read whole-genome sequencing, which allowed us to reveal fusion IncHI1B/IncFIB plasmids in ST512 isolates capable of simultaneously carrying hypervirulence (, , , ) and resistance determinants (, and others), and to obtain insights into their formation and transmission mechanisms. Comprehensive phenotypic, genotypic and phylogenetic analysis of the isolates, as well as of their plasmid repertoire, was performed. The data obtained will facilitate epidemiological surveillance of high-risk clones and the development of prevention strategies against them.

摘要

作为 家族的一员,已成为一种危险的病原体,在临床和社区环境中引发的各类传染病中占很大比例。一般来说, 群体被分为所谓的经典型(cKp)和高毒力型(hvKp)谱系。前者通常在医院中出现,能够迅速获得对多种抗菌药物的耐药性,而后者与更具侵袭性但耐药性较低的感染有关,主要发生在健康人群中。然而,在过去十年中,越来越多的报告证实这两个不同的谱系正在融合成具有两者特性的超级病原体克隆,从而对全球公共卫生构成重大威胁。这个过程与水平基因转移有关,其中质粒接合起着非常重要的作用。因此,研究质粒结构以及质粒在细菌物种内部和之间传播的方式,将有助于制定针对这些强大病原体的预防措施。在这项工作中,我们使用长读长和短读长全基因组测序对临床多重耐药 分离株进行了研究,这使我们能够在ST512分离株中发现能够同时携带高毒力( 、 、 、 )和耐药决定因素( 、 等)的融合IncHI1B/IncFIB质粒,并深入了解它们的形成和传播机制。对分离株及其质粒库进行了全面的表型、基因型和系统发育分析。所获得的数据将有助于对高风险 克隆进行流行病学监测,并制定针对它们的预防策略。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/72f8/10222915/c8ce18ae419d/microorganisms-11-01314-g001.jpg

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