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ST11-KL47 肺炎克雷伯菌中同时存在稀有 ArmA、RmtB 和 KPC-2 编码的多药耐药质粒和超毒力操纵子。

Co-Occurrence of Rare ArmA-, RmtB-, and KPC-2-Encoding Multidrug-Resistant Plasmids and Hypervirulence Operon in ST11-KL47 Klebsiella pneumoniae.

机构信息

Department of Clinical Laboratory Medicine, Shanghai Pulmonary Hospital, Tongji University School of Medicine, Shanghai, People's Republic of China.

Department of Respiratory Medicine, First Affiliated Hospital of Wenzhou Medical University, Wenzhou, People's Republic of China.

出版信息

Microbiol Spectr. 2022 Apr 27;10(2):e0237121. doi: 10.1128/spectrum.02371-21. Epub 2022 Mar 24.

Abstract

The rapid emergence of carbapenem-resistant Klebsiella pneumoniae (CRKP) and the comparatively limited development of new antibiotics pose a major threat to public health. Aminoglycosides are important options that can lower the mortality rate effectively in combination therapy with β-lactam agents. However, in this study, we observed two multidrug-resistant (MDR) K. pneumoniae named 1632 and 1864 that exhibited high-level resistance to both carbapenems and aminoglycosides. Through whole-genome sequencing (WGS), the unusual co-occurrence of , , and genes, associating with two key resistance plasmids, was observed in two isolates. Notably, we also found that the resistance gene and virulence factor operon co-occurred on the same plasmid in K. pneumoniae 1864. Detailed comparative genetic analysis showed that all these plasmids were recognized as mobilizable plasmids, as they all carry the essential site. Results of conjugation assay indicated that -positive plasmids in two isolates could self-transfer to Escherichia coli J53 effectively, especially, the p1864-1 plasmid, which could cotransfer hypervirulent and multidrug-resistant phenotypes to other isolates. Moreover, multiple insertion sequences (ISs) and transposons (Tns) were also found surrounding the vital resistant genes, which could even form a large antibiotic resistance island (ARI) and could stimulate mobilization of resistant determinants. Overall, we report the uncommon coexistence of plasmid, plasmid, and even virulence operon-encoding plasmid in K. pneumoniae isolates, which greatly increased the spread of these high-risk phenotypes and which are of great concern. Carbapenemase-producing Klebsiella pneumoniae have become a great challenge for antimicrobial chemotherapy, while aminoglycosides can lower the mortality rate effectively in combination therapy with them. Unfortunately, we isolated two K. pneumoniae from blood sample of patients that not only exhibited high-level resistance to carbapenems and aminoglycosides but also showed the unusual co-occurrence of the , , and genes. These elements were all located on mobile plasmids and flanked by polymorphic mobile genetic elements (MGEs). What's worse most, we also identified a conjugative virulent MDR plasmid, coharboring multiple resistant determinants, and operon, which was confirmed could transfer such high-risk phenotype to other isolates. The emergence of such conjugative virulence plasmids may promote the rapid dissemination of virulence-encoding elements among Gram-negative pathogens. This uncommon coexistence of , , , and virulence operon-encoding plasmids in K. pneumoniae, presents a huge threat to clinical treatment. Future studies are necessary to evaluate the prevalence of such isolates.

摘要

耐碳青霉烯肺炎克雷伯菌(CRKP)的迅速出现和新抗生素的相对有限发展对公共卫生构成了重大威胁。氨基糖苷类药物是重要的选择,与β-内酰胺类药物联合治疗可有效降低死亡率。然而,在这项研究中,我们观察到两种称为 1632 和 1864 的多药耐药(MDR)肺炎克雷伯菌对碳青霉烯类和氨基糖苷类均表现出高水平耐药。通过全基因组测序(WGS),我们观察到两种分离株中同时存在 和 基因,以及两个关键耐药质粒。值得注意的是,我们还发现 1864 号肺炎克雷伯菌中的 抗性基因和毒力因子 操纵子同时存在于同一个质粒上。详细的比较遗传分析表明,所有这些质粒都被认为是可移动质粒,因为它们都携带必需的 位点。接合试验结果表明,两种分离株中的 -阳性质粒可有效自我转移到大肠杆菌 J53 中,特别是 p1864-1 质粒,可将超毒力和多药耐药表型转移到其他分离株中。此外,还发现许多插入序列(ISs)和转座子(Tns)也围绕着重要的耐药基因,甚至可以形成一个大的抗生素耐药岛(ARI),并刺激耐药决定因素的移动。总的来说,我们报告了耐碳青霉烯肺炎克雷伯菌分离株中罕见的 质粒、 质粒甚至 毒力操纵子编码质粒的共存,这大大增加了这些高风险表型的传播,令人担忧。产碳青霉烯酶的肺炎克雷伯菌对抗菌化疗构成了巨大挑战,而氨基糖苷类药物与它们联合治疗可有效降低死亡率。不幸的是,我们从患者的血液样本中分离出两种肺炎克雷伯菌,它们不仅对碳青霉烯类和氨基糖苷类药物表现出高水平耐药,而且还表现出 、 、 和 基因的异常共存。这些元件都位于可移动质粒上,并被多态性移动遗传元件(MGEs)包围。更糟糕的是,我们还鉴定出一种具有多重耐药决定因素和 操纵子的可接合的毒力 MDR 质粒,证实该质粒可将这种高风险表型转移到其他分离株中。这种可接合的毒力质粒的出现可能会促进毒力编码元件在革兰氏阴性病原体中的快速传播。肺炎克雷伯菌中这种罕见的 、 、 、 和 毒力操纵子编码质粒的共存,对临床治疗构成了巨大威胁。需要进一步研究来评估此类分离株的流行情况。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8c5c/9045180/adf76de92187/spectrum.02371-21-f001.jpg

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