Ukhatova Y V, Erastenkova M V, Korshikova E S, Krylova E A, Mikhailova A S, Semilet T V, Tikhonova N G, Shvachko N A, Khlestkina E K
Vavilov All-Russian Institute of Plant Genetic Resources, St. Petersburg, 190000 Russia.
Mol Biol (Mosk). 2023 May-Jun;57(3):387-410.
The success of genome editing of crops using the CRISPR/Cas system largely depends on the correct choice of target genes, for which directed changes will increase yield and improve the quality of plant raw materials and resistance to biotic and abiotic stress factors. This work systematizes and catalogs data on target genes used to improve cultivated plants. The latest systematic review examined articles indexed in the Scopus database and published before August 17, 2019. Our work covers the period from August 18, 2019 to March 15, 2022. A search according to the given algorithm allowed us to identify 2090 articles, among which only 685 contain the results of gene editing of 28 species of cultivated plants (the search was carried out for 56 crops). A significant part of these papers considered either editing of target genes, which was previously carried out in similar works, or studies related to the field of reverse genetics, and only 136 articles contain data on editing of new target genes, whose modification is aimed at improving plant traits important for breeding. In total, 287 target genes of cultivated plants were subjected to editing in order to improve properties significant for breeding over the entire period of the CRISPR/Cas system application. This review presents a detailed analysis of the editing of new target genes. The studies were most often aimed at increasing productivity and disease resistance, as well as improving the properties of plant materials. It was noted whether it was possible to obtain stable transformants at the time of publication and whether editing was applied to non-model cultivars. The range of modified cultivars of a number of crops has been significantly expanded, in particular, for wheat, rice, soybean, tomato, potato, rapeseed, grape, and maize. In the vast majority of cases, editing constructs were delivered using agrobacterium-mediated transformation, less commonly, using biolistics, protoplast transfection, and haploinducers. The desired change in traits was most often achieved by gene knockout. In some cases, knockdown and nucleotide substitutions in the target gene were carried out. To obtain nucleotide substitutions in the genes of cultivated plants, base-editing and prime-editing technologies are increasingly used. The emergence of a convenient CRISPR/Cas editing system has contributed to the development of specific molecular genetics of many crop species.
利用CRISPR/Cas系统对作物进行基因组编辑的成功很大程度上取决于目标基因的正确选择,针对这些目标基因进行定向改变将提高产量、改善植物原材料质量并增强对生物和非生物胁迫因子的抗性。这项工作对用于改良栽培植物的目标基因数据进行了系统化整理和编目。最新的系统综述研究了Scopus数据库中索引的、于2019年8月17日前发表的文章。我们的工作涵盖2019年8月18日至2022年3月15日这一时期。按照给定算法进行检索后,我们识别出2090篇文章,其中只有685篇包含28种栽培植物的基因编辑结果(针对56种作物进行检索)。这些论文中的很大一部分要么考虑了此前在类似研究中已进行的目标基因编辑,要么涉及反向遗传学领域的研究,只有136篇文章包含新目标基因编辑的数据,其修饰旨在改善对育种重要的植物性状。在CRISPR/Cas系统应用的整个时期内,为改善对育种重要的特性,总共对287个栽培植物目标基因进行了编辑。本综述对新目标基因的编辑进行了详细分析。这些研究大多旨在提高生产力和抗病性,以及改善植物材料的特性。记录了在发表时是否有可能获得稳定的转化体,以及编辑是否应用于非模式品种。许多作物的改良品种范围已显著扩大,特别是小麦、水稻、大豆、番茄、马铃薯、油菜籽、葡萄和玉米。在绝大多数情况下,编辑构建体通过农杆菌介导的转化进行传递,较少使用生物弹道法、原生质体转染和单倍体诱导剂。性状的期望改变最常通过基因敲除实现。在某些情况下,会对目标基因进行基因沉默和核苷酸替换。为了在栽培植物基因中获得核苷酸替换,碱基编辑和引导编辑技术的使用越来越多。便捷的CRISPR/Cas编辑系统的出现推动了许多作物物种特定分子遗传学的发展。