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蝶呤,蝴蝶翅膀中的白色色素:通过PDF拟合、FIDEL拟合、Rietveld精修、固态核磁共振和DFT-D进行结构分析。

Leucopterin, the white pigment in butterfly wings: structural analysis by PDF fit, FIDEL fit, Rietveld refinement, solid-state NMR and DFT-D.

作者信息

Bravetti Federica, Tapmeyer Lukas, Skorodumov Kathrin, Alig Edith, Habermehl Stefan, Hühn Robert, Bordignon Simone, Gallo Angelo, Nervi Carlo, Chierotti Michele R, Schmidt Martin U

机构信息

Dipartimento di Chimica e Centro di Eccellenza NIS, Università degli Studi di Torino, Via Pietro Giuria 7, 10125 Torino, Italy.

Institut für Anorganische und Analytische Chemie, Goethe-Universität, Max-von-Laue-Strasse 7, 60438 Frankfurt am Main, Germany.

出版信息

IUCrJ. 2023 Jul 1;10(Pt 4):448-463. doi: 10.1107/S2052252523004281.

Abstract

Leucopterin (CHNO) is the white pigment in the wings of Pieris brassicae butterflies, and other butterflies; it can also be found in wasps and other insects. Its crystal structure and its tautomeric form in the solid state were hitherto unknown. Leucopterin turned out to be a variable hydrate, with 0.5 to about 0.1 molecules of water per leucopterin molecule. Under ambient conditions, the preferred state is the hemihydrate. Initially, all attempts to grow single crystals suitable for X-ray diffraction were to no avail. Attempts to determine the crystal structure by powder diffraction using the direct-space method failed, because the trials did not include the correct, but rare, space group P2/c. Attempts were made to solve the crystal structure by a global fit to the pair distribution function (PDF-Global-Fit), as described by Prill and co-workers [Schlesinger et al. (2021). J. Appl. Cryst. 54, 776-786]. The approach worked well, but the correct structure was not found, because again the correct space group was not included. Finally, tiny single crystals of the hemihydrate could be obtained, which allowed at least the determination of the crystal symmetry and the positions of the C, N and O atoms. The tautomeric state of the hemihydrate was assessed by multinuclear solid-state NMR spectroscopy. N CPMAS spectra showed the presence of one NH and three NH groups, and one unprotonated N atom, which agreed with the H MAS and C CPMAS spectra. Independently, the tautomeric state was investigated by lattice-energy minimizations with dispersion-corrected density functional theory (DFT-D) on 17 different possible tautomers, which also included the prediction of the corresponding H, C and N chemical shifts in the solid. All methods showed the presence of the 2-amino-3,5,8-H tautomer. The DFT-D calculations also confirmed the crystal structure. Heating of the hemihydrate results in a slow release of water between 130 and 250 °C, as shown by differential thermal analysis and thermogravimetry (DTA-TG). Temperature-dependent powder X-ray diffraction (PXRD) showed an irreversible continuous shift of the reflections upon heating, which reveals that leucopterin is a variable hydrate. This observation was also confirmed by PXRD of samples obtained under various synthetic and drying conditions. The crystal structure of a sample with about 0.2 molecules of water per leucopterin was solved by a fit with deviating lattice parameters (FIDEL), as described by Habermehl et al. [Acta Cryst. (2022), B78, 195-213]. A local fit, starting from the structure of the hemihydrate, as well as a global fit, starting from random structures, were performed, followed by Rietveld refinements. Despite dehydration, the space group remains P2/c. In both structures (hemihydrate and variable hydrate), the leucopterin molecules are connected by 2-4 hydrogen bonds into chains, which are connected by further hydrogen bonds to neighbouring chains. The molecular packing is very efficient. The density of leucopterin hemihydrate is as high as 1.909 kg dm, which is one of the highest densities for organic compounds consisting of C, H, N and O only. The high density might explain the good light-scattering and opacity properties of the wings of Pieris brassicae and other butterflies.

摘要

蝶呤(CHNO)是粉蝶等蝴蝶翅膀中的白色色素,在黄蜂和其他昆虫中也能找到。其晶体结构及其固态互变异构形式此前尚不清楚。结果表明蝶呤是一种可变水合物,每个蝶呤分子含有0.5至约0.1个水分子。在环境条件下,最常见的状态是半水合物。最初,所有生长适合X射线衍射的单晶的尝试均未成功。使用直接空间法通过粉末衍射确定晶体结构的尝试也失败了,因为试验未包括正确但罕见的空间群P2/c。按照Prill及其同事的描述[施莱辛格等人(2021年)。《应用晶体学杂志》。54,776 - 786],尝试通过对配对分布函数进行全局拟合(PDF - 全局拟合)来解析晶体结构。该方法效果良好,但未找到正确结构,因为同样未包括正确的空间群。最后,获得了半水合物的微小单晶,这至少使得能够确定晶体对称性以及C、N和O原子的位置。通过多核固态核磁共振光谱评估了半水合物的互变异构状态。N CPMAS光谱显示存在一个NH和三个NH基团,以及一个未质子化的N原子,这与H MAS和C CPMAS光谱一致。另外,通过使用色散校正密度泛函理论(DFT - D)对17种不同的可能互变异构体进行晶格能量最小化研究了互变异构状态,并预测了固体中相应的H、C和N化学位移。所有方法均表明存在2 - 氨基 - 3,5,8 - H互变异构体。DFT - D计算也证实了晶体结构。差示热分析和热重分析(DTA - TG)表明,半水合物在130至250°C之间会缓慢释放水分。变温粉末X射线衍射(PXRD)显示加热时反射峰发生不可逆的连续位移,这表明蝶呤是一种可变水合物。在各种合成和干燥条件下获得的样品的PXRD也证实了这一观察结果。按照哈贝梅尔等人的描述[《晶体学报》(2022年),B78,195 - 213],通过对具有偏差晶格参数的样品进行拟合(FIDEL)解析了每个蝶呤含有约0.2个水分子的样品的晶体结构。从半水合物结构开始进行局部拟合,以及从随机结构开始进行全局拟合,随后进行Rietveld精修。尽管发生了脱水,但空间群仍为P2/c。在两种结构(半水合物和可变水合物)中,蝶呤分子通过2 - 4个氢键连接成链,这些链通过进一步的氢键与相邻链相连。分子堆积非常高效。蝶呤半水合物的密度高达1.909 kg dm,这是仅由C、H、N和O组成的有机化合物中密度最高的之一。这种高密度可能解释了粉蝶和其他蝴蝶翅膀良好 的光散射和不透明特性。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8f81/10324491/ff993681d13f/m-10-00448-fig1.jpg

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