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细胞条形码:从发育追踪到抗肿瘤药物发现。

Cellular barcoding: From developmental tracing to anti-tumor drug discovery.

机构信息

Medical Center of Hematology, The Second Affiliated Hospital, Army Medical University, Chongqing, 40037, China; State Key Laboratory of Trauma, Burn and Combined Injury, Army Medical University, Chongqing, 40037, China.

Medical Center of Hematology, The Second Affiliated Hospital, Army Medical University, Chongqing, 40037, China; State Key Laboratory of Trauma, Burn and Combined Injury, Army Medical University, Chongqing, 40037, China; Jinfeng Laboratory, Chongqing, 401329, China.

出版信息

Cancer Lett. 2023 Jul 28;567:216281. doi: 10.1016/j.canlet.2023.216281. Epub 2023 Jun 17.

DOI:10.1016/j.canlet.2023.216281
PMID:37336285
Abstract

Clonal evolution has gained immense attention in explaining cancer cell status, history, and fate during cancer progression. Current single-cell or spatial transcriptome technologies have broadened our understanding of various mechanisms underlying cancer initiation, relapse, and drug resistance. However, technical challenges still hinder a better understanding of the dynamics of distinctive phenotypic states and abnormal trajectories from normal physiological transition to malignant stages. Cellular barcoding enabled lineage tracing on parallelly massive cells at single-cell resolution through different mechanisms lately, enabling new insights into exploring developmental trajectories, cancer progression, and targeted therapies. This review summarizes the latest noteworthy and robust strategies for different types of cellular barcodes. To introduce the major characteristics, advantages and limitations of these different strategies, this review will further guide in choosing or improving cellular barcoding technologies and their applications in cancer research.

摘要

克隆进化在解释癌症进展过程中癌细胞的状态、历史和命运方面引起了极大的关注。目前的单细胞或空间转录组技术拓宽了我们对癌症发生、复发和耐药性背后各种机制的理解。然而,技术挑战仍然阻碍了我们更好地理解从正常生理转化到恶性阶段的独特表型状态和异常轨迹的动态。最近,细胞条形码通过不同的机制使并行大量细胞在单细胞分辨率上进行谱系追踪成为可能,为探索发育轨迹、癌症进展和靶向治疗提供了新的见解。本综述总结了不同类型细胞条形码的最新显著和强大的策略。为了介绍这些不同策略的主要特点、优点和局限性,本综述将进一步指导选择或改进细胞条形码技术及其在癌症研究中的应用。

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Cellular barcoding: From developmental tracing to anti-tumor drug discovery.细胞条形码:从发育追踪到抗肿瘤药物发现。
Cancer Lett. 2023 Jul 28;567:216281. doi: 10.1016/j.canlet.2023.216281. Epub 2023 Jun 17.
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Connecting past and present: single-cell lineage tracing.连接过去和现在:单细胞谱系追踪。
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Beyond genome sequencing: lineage tracking with barcodes to study the dynamics of evolution, infection, and cancer.超越基因组测序:利用条形码进行谱系追踪以研究进化、感染和癌症的动态变化。
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Cellular barcoding: lineage tracing, screening and beyond.细胞条形码:谱系追踪、筛选及其他。
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Functionalized Lineage Tracing Can Enable the Development of Homogenization-Based Therapeutic Strategies in Cancer.功能化谱系示踪可促进基于同质化的癌症治疗策略的发展。
Front Immunol. 2022 May 6;13:859032. doi: 10.3389/fimmu.2022.859032. eCollection 2022.
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A mouse model with high clonal barcode diversity for joint lineage, transcriptomic, and epigenomic profiling in single cells.一种具有高克隆条形码多样性的小鼠模型,用于单细胞中的联合谱系、转录组和表观基因组分析。
Cell. 2023 Nov 9;186(23):5183-5199.e22. doi: 10.1016/j.cell.2023.09.019. Epub 2023 Oct 17.
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Quantitative fate mapping: A general framework for analyzing progenitor state dynamics via retrospective lineage barcoding.定量命运图谱分析:通过回溯谱系标记分析祖细胞状态动力学的通用框架
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Lineage reconstruction from clonal correlations.基于克隆相关性的系统发育重建。
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Next-Generation Lineage Tracing and Fate Mapping to Interrogate Development.下一代谱系追踪和命运图谱解析发育。
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Cancer cells exhibit clonal diversity in phenotypic plasticity.癌细胞在表型可塑性方面表现出克隆多样性。
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