School of Aquatic and Fishery Sciences, University of Washington, Seattle, WA, USA.
Heredity (Edinb). 2023 Aug;131(2):170-177. doi: 10.1038/s41437-023-00633-6. Epub 2023 Jun 19.
For species with overlapping generations, the most widely used method to calculate effective population size (N) is Hill's, the key parameter for which is lifetime variance in offspring number ([Formula: see text]). Hill's model assumes a stable age structure and constant abundance, and sensitivity to those assumptions has been evaluated previously. Here I evaluate the robustness of Hill's model to extreme patterns of reproductive success, whose effects have not been previously examined: (1) very strong reproductive skew; (2) strong temporal autocorrelations in individual reproductive success; and (3) strong covariance of individual reproduction and survival. Genetic drift (loss of heterozygosity and increase in allele frequency variance) was simulated in age-structured populations using methods that generated no autocorrelations or covariances (Model NoCor); or created strong positive (Model Positive) or strong negative (Model Negative) temporal autocorrelations in reproduction and covariances between reproduction and survival. Compared to Model NoCor, the other models led to greatly elevated or reduced [Formula: see text], and hence greatly reduced or elevated N, respectively. A new index is introduced (ρ,), which is the correlation between (1) the number of offspring produced by each individual at the age at maturity (α), and (2) the total number of offspring produced during the rest of their lifetimes. Mean ρ, was ≈0 under Model NoCor, strongly positive under Model Positive, and strongly negative under Model Negative. Even under the most extreme reproductive scenarios in Models Positive and Negative, when [Formula: see text] was calculated from the realized population pedigree and used to calculate N in Hill's model, the result accurately predicted the rate of genetic drift in simulated populations. These results held for scenarios where age-specific reproductive skew was random (variance ≈ mean) and highly overdispersed (variance up to 20 times the mean). Collectively, these results are good news for researchers as they demonstrate the robustness of Hill's model even in extreme reproductive scenarios.
对于具有重叠世代的物种,计算有效种群大小(N)最广泛使用的方法是 Hill's 方法,该方法的关键参数是后代数量的终生方差([公式:见正文])。Hill's 模型假设年龄结构稳定且丰度恒定,并且之前已经评估了对这些假设的敏感性。在这里,我评估了 Hill's 模型对以下极端生殖成功模式的稳健性,这些模式的影响以前尚未研究过:(1)非常强烈的生殖偏斜;(2)个体生殖成功的强烈时间自相关;(3)个体繁殖和生存的强烈协方差。使用不会产生自相关或协方差的方法(模型 NoCor)或在繁殖和繁殖与生存之间产生强烈正(模型 Positive)或强烈负(模型 Negative)时间自相关的方法,在年龄结构种群中模拟遗传漂变(杂合性丧失和等位基因频率方差增加)。与模型 NoCor 相比,其他模型导致[公式:见正文]大大升高或降低,因此 N 分别大大降低或升高。引入了一个新指数(ρ,),该指数是个体在成熟时(α)所产生的后代数量与他们余生所产生的后代总数之间的(1)相关性。在模型 NoCor 下,平均ρ,≈0,在模型 Positive 下呈强烈正相关,在模型 Negative 下呈强烈负相关。即使在模型 Positive 和 Negative 中最极端的生殖情况下,当根据实际种群系谱计算[公式:见正文]并在 Hill's 模型中用于计算 N 时,结果准确地预测了模拟种群中的遗传漂变率。这些结果适用于年龄特异性生殖偏斜随机(方差≈均值)和高度过分散(方差高达均值的 20 倍)的情况。总的来说,这些结果对研究人员来说是个好消息,因为它们表明 Hill's 模型即使在极端生殖情况下也具有稳健性。