Institute of Food Biotechnology and Genomics of the NAS of Ukraine, 2a Baida Vyshnevetskyi str, Kyiv, 04123, Ukraine.
Explogen LLC, 20 Zelena str., Lviv, 79005, Ukraine.
J Appl Genet. 2023 Sep;64(3):559-567. doi: 10.1007/s13353-023-00766-8. Epub 2023 Jun 22.
The rapid development of new molecular methods and approaches, sequencing technologies, has provided new insights into genetic and structural features of bacterial genomes. Information about the genetic organization of metabolic pathways and their regulatory elements has greatly contributed to the increase in the number of studies related to the construction of new bacterial strains with improved characteristics. In this study, the entire genome of the producing strain Clostridium sp. UCM В-7570 from the "Collection of producing strains of microorganisms and plant lines for food and agricultural biotechnology" of Institute of Food Biotechnology and Genomics of the National Academy of Sciences of Ukraine was sequenced and characterized. The genome was assembled into the scaffold with a total size of 4,470,321 bp and a GC content of 29.7%. The total number of genes identified was 4262, of which 4057 encoded proteins, 10 were rRNA operons, and 80 were tRNA genes. The genes of the sequenced genome encoding enzymes involved in butanol fermentation were found and analyzed. They were organized into cluster structures, and their protein sequences were found to be similar to the corresponding strains of C. acetobutylicum, C. beijerinckii, and C. pasteurianum type strains with the highest similarity to the latter. Thus, Clostridium sp. UCM В-7570 producing strain was identified as C. pasteurianum and suggested for metabolic engineering purposes.
新的分子方法和技术的快速发展,如测序技术,为细菌基因组的遗传和结构特征提供了新的见解。有关代谢途径的遗传组织及其调控元件的信息极大地促进了与构建具有改良特性的新型细菌菌株相关的研究数量的增加。在这项研究中,对来自乌克兰国家科学院食品生物技术和基因组学研究所“微生物和植物生产菌株收集用于食品和农业生物技术”的产菌株 Clostridium sp. UCM В-7570 的整个基因组进行了测序和表征。基因组被组装成一个总大小为 4,470,321 bp、GC 含量为 29.7%的支架。鉴定出的基因总数为 4262 个,其中 4057 个编码蛋白质,10 个是 rRNA 操纵子,80 个是 tRNA 基因。发现并分析了测序基因组中编码参与丁醇发酵的酶的基因。它们被组织成簇结构,并且它们的蛋白质序列与 C. acetobutylicum、C. beijerinckii 和 C. pasteurianum 型菌株的相应基因具有最高的相似性,与后者最为相似。因此,产菌株 Clostridium sp. UCM В-7570 被鉴定为 C. pasteurianum,并建议用于代谢工程目的。