巴斯德梭菌ATCC 6013的全基因组序列
Closed Genome Sequence of Clostridium pasteurianum ATCC 6013.
作者信息
Rotta Carlo, Poehlein Anja, Schwarz Katrin, McClure Peter, Daniel Rolf, Minton Nigel P
机构信息
Genomic and Applied Microbiology & Göttingen Genomics Laboratory, Georg-August-University Göttingen, Göttingen, Germany.
The Clostridia Research Group, BBSRC/EPSRC Synthetic Biology Research Centre, School of Life Sciences, Centre for Biomolecular Sciences, University of Nottingham, Nottingham, United Kingdom.
出版信息
Genome Announc. 2015 Feb 19;3(1):e01596-14. doi: 10.1128/genomeA.01596-14.
Abstract
We report here the closed genome of Clostridium pasteurianum ATCC 6013, a saccharolytic, nitrogen-fixing, and spore-forming Gram-positive obligate anaerobe. The organism is of biotechnological interest due to the production of solvents (butanol and 1,3-propanediol) but can be associated with food spoilage. The genome comprises a total of 4,351,223 bp.
摘要
我们在此报告巴氏梭菌ATCC 6013的完整基因组，这是一种能进行糖酵解、固氮且形成芽孢的革兰氏阳性专性厌氧菌。由于该微生物能产生溶剂（丁醇和1,3 - 丙二醇），因而具有生物技术方面的研究价值，但它也可能与食品变质有关。其基因组总共包含4,351,223个碱基对。
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2
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Genome Announc. 2013 Nov 27;1(6):e00997-13. doi: 10.1128/genomeA.00997-13.
3
IMG: the Integrated Microbial Genomes database and comparative analysis system.
Nucleic Acids Res. 2012 Jan;40(Database issue):D115-22. doi: 10.1093/nar/gkr1044.
4
Continuous butanol production with reduced byproducts formation from glycerol by a hyper producing mutant of Clostridium pasteurianum.
Appl Microbiol Biotechnol. 2012 Feb;93(4):1485-94. doi: 10.1007/s00253-011-3629-0. Epub 2011 Nov 4.
5
Clostridial spore germination versus bacilli: genome mining and current insights.
Food Microbiol. 2011 Apr;28(2):266-74. doi: 10.1016/j.fm.2010.03.016. Epub 2010 Apr 1.
6
Thermoaciduric Clostridium pasteurianum spoilage of shelf-stable apple juice.
J Food Prot. 2010 Oct;73(10):1886-90. doi: 10.4315/0362-028x-73.10.1886.
7
Prodigal: prokaryotic gene recognition and translation initiation site identification.
BMC Bioinformatics. 2010 Mar 8;11:119. doi: 10.1186/1471-2105-11-119.
8
IMG ER: a system for microbial genome annotation expert review and curation.
Bioinformatics. 2009 Sep 1;25(17):2271-8. doi: 10.1093/bioinformatics/btp393. Epub 2009 Jun 27.
9
RNAmmer: consistent and rapid annotation of ribosomal RNA genes.
Nucleic Acids Res. 2007;35(9):3100-8. doi: 10.1093/nar/gkm160. Epub 2007 Apr 22.
10
A comparative genomic view of clostridial sporulation and physiology.
Nat Rev Microbiol. 2005 Dec;3(12):969-78. doi: 10.1038/nrmicro1288.
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