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利用分子对接、 MMGBSA、MD 模拟和线性回归研究植物化学物质对麦芽糖酶-葡糖苷酶的再利用,以鉴定潜在的抗糖尿病化合物。

Repurposing phytochemicals of against maltase-glucoamylase using molecular docking, MMGBSA, MD simulation and linear regression to identify potential anti-diabetic compounds.

机构信息

Central Molecular Laboratory, Govind Ballabh Pant Institute of Post Graduate Medical Education and Research, New Delhi, India.

Academy of Scientific and Innovative Research (AcSIR), Ghaziabad, Uttar Pradesh, India.

出版信息

J Biomol Struct Dyn. 2024 Jul;42(10):5197-5206. doi: 10.1080/07391102.2023.2225107. Epub 2023 Jun 22.

Abstract

Diabetes is a common lifestyle disorder found in populations of different age groups. Maltase-glucoamylase catalyses the release of the glucose molecule in the final enzymatic reaction of starch digestion; therefore, inhibition of maltase-glucoamylase is one of the approaches in the development of therapeutics for diabetes. is commonly recommended in Ayurveda for the treatment of diabetes. The current study applied a structure-based drug design approach to repurpose the phytochemicals of to identify potential inhibitors for maltase-glucoamylase. 70 phytochemicals of were screened against maltase-glucoamylase and top 5 molecules 8-p-hydroxybenzylisovitexin, isoorientin, cucurbitacin B, cucurbitacin E, and cucurbitacin I with significant binding energy of -10 kcal/mol, -9.9 kcal/mol, -9.6 kcal/mol, -9.2 kcal/mol, and -7.7 kcal/mol were identified. Furthermore, MMGBSA, pharmacokinetics properties and toxicity prediction were performed on the five identified molecules and top 3 molecules were selected for molecular dynamics (MD) simulation. It was observed from the structural flexibility and dynamic behaviour of the systems that conformational changes were noticed in the complexes as compared to its native state, which suggests that the 3 molecules, namely 8-p-hydroxybenzylisovitexin, isoorientin, and cucurbitacin I of may act as inhibitors for maltase-glucoamylase.Communicated by Ramaswamy H. Sarma.

摘要

糖尿病是一种常见的生活方式障碍,在不同年龄组的人群中都有发现。麦芽糖酶-葡糖苷酶在淀粉消化的最终酶反应中催化葡萄糖分子的释放;因此,抑制麦芽糖酶-葡糖苷酶是开发糖尿病治疗方法的途径之一。在阿育吠陀医学中,常被推荐用于治疗糖尿病。本研究应用基于结构的药物设计方法,重新利用 的植物化学物质,以鉴定麦芽糖酶-葡糖苷酶的潜在抑制剂。对 的 70 种植物化学物质进行了麦芽糖酶-葡糖苷酶筛选,发现了 8-对羟基苯甲基异荭草苷、异荭草苷、葫芦素 B、葫芦素 E 和葫芦素 I 这 5 种具有显著结合能(-10 kcal/mol、-9.9 kcal/mol、-9.6 kcal/mol、-9.2 kcal/mol 和-7.7 kcal/mol)的分子。此外,对这 5 种鉴定出的分子以及 top 3 种分子进行了 MMGBSA、药代动力学性质和毒性预测,并选择进行分子动力学(MD)模拟。从系统的结构灵活性和动态行为观察到,与天然状态相比,复合物中观察到构象变化,这表明 3 种分子,即 的 8-对羟基苯甲基异荭草苷、异荭草苷和葫芦素 I,可能作为麦芽糖酶-葡糖苷酶的抑制剂。由 Ramaswamy H. Sarma 传达。

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