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金属酶和金属配合物催化的水解反应中的独特化学因素。

Distinct chemical factors in hydrolytic reactions catalyzed by metalloenzymes and metal complexes.

机构信息

Department of Chemistry, University of Miami, Coral Gables, FL 33146, USA.

出版信息

Chem Commun (Camb). 2023 Jul 18;59(58):8911-8928. doi: 10.1039/d3cc01380d.

Abstract

The selective hydrolysis of the extremely stable phosphoester, peptide and ester bonds of molecules by bio-inspired metal-based catalysts (metallohydrolases) is required in a wide range of biological, biotechnological and industrial applications. Despite the impressive advances made in the field, the ultimate goal of designing efficient enzyme mimics for these reactions is still elusive. Its realization will require a deeper understanding of the diverse chemical factors that influence the activities of both natural and synthetic catalysts. They include catalyst-substrate complexation, non-covalent interactions and the electronic nature of the metal ion, ligand environment and nucleophile. Based on our computational studies, their roles are discussed for several mono- and binuclear metallohydrolases and their synthetic analogues. Hydrolysis by natural metallohydrolases is found to be promoted by a ligand environment with low basicity, a metal bound water and a heterobinuclear metal center (in binuclear enzymes). Additionally, peptide and phosphoester hydrolysis is dominated by two competing effects, nucleophilicity and Lewis acid activation, respectively. In synthetic analogues, hydrolysis is facilitated by the inclusion of a second metal center, hydrophobic effects, a biological metal (Zn, Cu and Co) and a terminal hydroxyl nucleophile. Due to the absence of the protein environment, hydrolysis by these small molecules is exclusively influenced by nucleophile activation. The results gleaned from these studies will enhance the understanding of fundamental principles of multiple hydrolytic reactions. They will also advance the development of computational methods as a predictive tool to design more efficient catalysts for hydrolysis, Diels-Alder reaction, Michael addition, epoxide opening and aldol condensation.

摘要

生物启发的金属基催化剂(金属水解酶)对分子中极其稳定的磷酸酯、肽和酯键的选择性水解在广泛的生物、生物技术和工业应用中是必需的。尽管在该领域取得了令人印象深刻的进展,但设计这些反应高效酶模拟物的最终目标仍然难以实现。要实现这一目标,需要更深入地了解影响天然和合成催化剂活性的各种化学因素。这些因素包括催化剂-底物络合、非共价相互作用以及金属离子的电子性质、配体环境和亲核试剂。基于我们的计算研究,讨论了它们在几种单核和双核金属水解酶及其合成类似物中的作用。研究发现,天然金属水解酶通过配位环境低碱性、金属结合水和异双核金属中心(在双核酶中)促进水解。此外,肽和磷酸酯的水解分别由亲核性和路易斯酸活化这两个竞争效应主导。在合成类似物中,通过包含第二个金属中心、疏水效应、生物金属(Zn、Cu 和 Co)和末端羟基亲核试剂来促进水解。由于缺乏蛋白质环境,这些小分子的水解仅受亲核试剂活化的影响。从这些研究中获得的结果将增强对多种水解反应基本原理的理解。它们还将推进计算方法的发展,作为设计更高效水解、Diels-Alder 反应、迈克尔加成、环氧化物开环和醛醇缩合催化剂的预测工具。

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