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基于术前常规多模态MRI影像组学预测成人胶质瘤的组织病理学分级:一种机器学习模型

Predicting Histopathological Grading of Adult Gliomas Based On Preoperative Conventional Multimodal MRI Radiomics: A Machine Learning Model.

作者信息

Du Peng, Liu Xiao, Wu Xuefan, Chen Jiawei, Cao Aihong, Geng Daoying

机构信息

Department of Radiology, Huashan Hospital, Fudan University, Shanghai 200040, China.

Department of Radiology, the Second Affiliated Hospital of Xuzhou Medical University, Xuzhou 221000, China.

出版信息

Brain Sci. 2023 Jun 5;13(6):912. doi: 10.3390/brainsci13060912.

Abstract

PURPOSE

The accurate preoperative histopathological grade diagnosis of adult gliomas is of great significance for the formulation of a surgical plan and the implementation of a subsequent treatment. The aim of this study is to establish a predictive model for classifying adult gliomas into grades 2-4 based on preoperative conventional multimodal MRI radiomics.

PATIENTS AND METHODS

Patients with pathologically confirmed gliomas at Huashan Hospital, Fudan University, between February 2017 and July 2019 were retrospectively analyzed. Two regions of interest (ROIs), called the maximum anomaly region (ROI1) and the tumor region (ROI2), were delineated on the patients' preoperative MRIs utilizing the tool ITK-SNAP, and Pyradiomics 3.0 was applied to execute feature extraction. Feature selection was performed utilizing a least absolute shrinkage and selection operator (LASSO) filter. Six classifiers, including Gaussian naive Bayes (GNB), random forest (RF), K-nearest neighbor (KNN), support vector machine (SVM) with a linear kernel, adaptive boosting (AB), and multilayer perceptron (MLP) were used to establish predictive models, and the predictive performance of the six classifiers was evaluated through five-fold cross-validation. The performance of the predictive models was evaluated using the AUC and other metrics. After that, the model with the best predictive performance was tested using the external data from The Cancer Imaging Archive (TCIA).

RESULTS

According to the inclusion and exclusion criteria, 240 patients with gliomas were identified for inclusion in the study, including 106 grade 2, 68 grade 3, and 66 grade 4 gliomas. A total of 150 features was selected, and the MLP classifier had the best predictive performance among the six classifiers based on T2-FLAIR (mean AUC of 0.80 ± 0.07). The SVM classifier had the best predictive performance among the six classifiers based on DWI (mean AUC of 0.84 ± 0.05); the SVM classifier had the best predictive performance among the six classifiers based on CE-T1WI (mean AUC of 0.85 ± 0.06). Among the six classifiers, based on ROI1, the MLP classifier had the best prediction performance (mean AUC of 0.78 ± 0.07); among the six classifiers, based on ROI2, the SVM classifier had the best prediction performance (mean AUC of 0.82 ± 0.07). Among the six classifiers, based on the multimodal MRI of all the ROIs, the SVM classifier had the best prediction performance (average AUC of 0.85 ± 0.04). The SVM classifier, based on the multimodal MRI of all the ROIs, achieved an AUC of 0.81 using the external data from TCIA.

CONCLUSIONS

The prediction model, based on preoperative conventional multimodal MRI radiomics, established in this study can conveniently, accurately, and noninvasively classify adult gliomas into grades 2-4, providing certain assistance for the precise diagnosis and treatment of patients and optimizing their clinical management.

摘要

目的

准确的成人胶质瘤术前组织病理学分级诊断对于制定手术方案及后续治疗的实施具有重要意义。本研究旨在基于术前常规多模态MRI影像组学建立一个将成人胶质瘤分为2 - 4级的预测模型。

患者与方法

回顾性分析2017年2月至2019年7月在复旦大学附属华山医院病理确诊为胶质瘤的患者。利用ITK-SNAP工具在患者术前MRI上勾画两个感兴趣区域(ROI),即最大异常区域(ROI1)和肿瘤区域(ROI2),并应用Pyradiomics 3.0进行特征提取。利用最小绝对收缩和选择算子(LASSO)滤波器进行特征选择。使用包括高斯朴素贝叶斯(GNB)、随机森林(RF)、K近邻(KNN)、线性核支持向量机(SVM)、自适应增强(AB)和多层感知器(MLP)在内的六种分类器建立预测模型,并通过五折交叉验证评估六种分类器的预测性能。使用AUC等指标评估预测模型的性能。之后,使用来自癌症影像存档(TCIA)的外部数据对预测性能最佳的模型进行测试。

结果

根据纳入和排除标准,确定240例胶质瘤患者纳入研究,其中二级胶质瘤106例,三级胶质瘤68例,四级胶质瘤66例。共选择了150个特征,基于T2-FLAIR,MLP分类器在六种分类器中预测性能最佳(平均AUC为0.80±0.07)。基于DWI,SVM分类器在六种分类器中预测性能最佳(平均AUC为0.84±0.05);基于CE-T1WI,SVM分类器在六种分类器中预测性能最佳(平均AUC为0.85±0.06)。在六种分类器中,基于ROI1,MLP分类器预测性能最佳(平均AUC为0.78±0.07);基于ROI2,SVM分类器在六种分类器中预测性能最佳(平均AUC为0.82±0.07)。在六种分类器中,基于所有ROI的多模态MRI,SVM分类器预测性能最佳(平均AUC为

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