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从玉米根际分离的sp. IMCC1007的基因组序列数据:在镰刀菌酸霉菌毒素生物降解中具有潜力的菌株

Genome sequence data of sp. IMCC1007 isolated from maize rhizosphere: A potential strain in fusaric acid mycotoxin biodegradation.

作者信息

Mohd Din Abd Rahman Jabir, Othman Nor Zalina

机构信息

Innovation Centre in Agritechnology for Advanced Bioprocess (ICA), Universiti Teknologi Malaysia, Pagoh Education Hub, 84600 Muar, Johor, Malaysia.

Faculty of Chemical and Energy Engineering, Universiti Teknologi Malaysia, 81310 Johor Bahru, Malaysia.

出版信息

Data Brief. 2023 May 6;48:109204. doi: 10.1016/j.dib.2023.109204. eCollection 2023 Jun.

Abstract

sp. IMCC1007 is a gram-negative, aerobic bacterium affiliated with class Betaproteobacteria, which was successfully isolated from maize rhizospheric soil sample in UTM research plot, Pagoh, Malaysia by using enrichment method. Strain IMCC1007 utilized 50 mgL fusaric acid as its carbon source and degraded it completely within 14 h. Genome sequencing was performed using Illumina NovaSeq platform. The assembled genome was annotated using RAST (Rapid Annotation Subsystem Technology) server. The genome size was approximately 8,568,405 base pairs (bp) in 147 contigs with a G+C content of 66.04%. The genome includes 8,733 coding sequences and 68 RNAs. The genome sequence has been deposited at GenBank with the accession number of JAPVQY000000000. In the pairwise genome-to-genome comparisons, the strain IMCC1007 had an average nucleotide identity (ANI) of 91.9% and digital DNA-DNA hybridization (dDDH) value of 55.2% with DSM 16086 respectively. Interestingly, fusaric acid resistance gene (C) and ABCDFXT gene clusters (hydroxylation of pyridine compound) were found in the genome. Additionally, preliminary genome annotation analysis of strain IMCC1007 identified tryptophan halogenase (A) gene responsible for antifungal pyrrolnitrin biosynthesis. This dataset herein provides further insights into the fusaric acid degradation mechanism of the genus .

摘要

菌株IMCC1007是一种革兰氏阴性需氧细菌,隶属于β-变形菌纲,通过富集培养法从马来西亚帕戈乌玛拉理工大学研究区的玉米根际土壤样本中成功分离得到。IMCC1007菌株以50 mg/L的镰刀菌酸作为碳源,并在14小时内将其完全降解。使用Illumina NovaSeq平台进行基因组测序。利用RAST(快速注释子系统技术)服务器对组装好的基因组进行注释。基因组大小约为8,568,405碱基对(bp),分布于147个重叠群中,G+C含量为66.04%。该基因组包含8,733个编码序列和68个RNA。基因组序列已保存在GenBank中,登录号为JAPVQY000000000。在成对的全基因组比较中,IMCC1007菌株与DSM 16086的平均核苷酸同一性(ANI)为91.9%,数字DNA-DNA杂交(dDDH)值为55.2%。有趣的是,在基因组中发现了镰刀菌酸抗性基因(C)和ABDFXT基因簇(吡啶化合物的羟基化)。此外,对IMCC1007菌株的初步基因组注释分析鉴定出负责抗真菌吡咯菌素生物合成的色氨酸卤化酶(A)基因。本文中的这些数据集为该属的镰刀菌酸降解机制提供了进一步的见解。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/072b/10293998/91902e420d7c/gr1.jpg

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