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基于适体的超分辨率 RNA 成像的快速交换螺环罗丹明探针。

Fast-exchanging spirocyclic rhodamine probes for aptamer-based super-resolution RNA imaging.

机构信息

Institute of Pharmacy and Molecular Biotechnology (IPMB), Heidelberg University, Heidelberg, Germany.

Institute of Applied Physics (APH), Karlsruhe Institute of Technology (KIT), Karlsruhe, Germany.

出版信息

Nat Commun. 2023 Jun 30;14(1):3879. doi: 10.1038/s41467-023-39611-1.

Abstract

Live-cell RNA imaging with high spatial and temporal resolution remains a major challenge. Here we report the development of RhoBAST:SpyRho, a fluorescent light-up aptamer (FLAP) system ideally suited for visualizing RNAs in live or fixed cells with various advanced fluorescence microscopy modalities. Overcoming problems associated with low cell permeability, brightness, fluorogenicity, and signal-to-background ratio of previous fluorophores, we design a novel probe, SpyRho (Spirocyclic Rhodamine), which tightly binds to the RhoBAST aptamer. High brightness and fluorogenicity is achieved by shifting the equilibrium between spirolactam and quinoid. With its high affinity and fast ligand exchange, RhoBAST:SpyRho is a superb system for both super-resolution SMLM and STED imaging. Its excellent performance in SMLM and the first reported super-resolved STED images of specifically labeled RNA in live mammalian cells represent significant advances over other FLAPs. The versatility of RhoBAST:SpyRho is further demonstrated by imaging endogenous chromosomal loci and proteins.

摘要

活细胞 RNA 成像具有高时空分辨率,但仍是一个主要挑战。本文报道了 RhoBAST:SpyRho 的开发,这是一种荧光点亮适体(FLAP)系统,非常适合使用各种先进的荧光显微镜模式在活细胞或固定细胞中可视化 RNA。为克服先前荧光染料细胞通透性差、亮度低、生色性和信号背景比低等问题,我们设计了一种新型探针 SpyRho(螺环罗丹明),它与 RhoBAST 适体紧密结合。螺内酰胺和醌型之间平衡的移动实现了高亮度和生色性。凭借其高亲和力和快速配体交换,RhoBAST:SpyRho 是超分辨率 SMLM 和 STED 成像的绝佳系统。与其他 FLAP 相比,其在 SMLM 中的优异性能以及首次报道的活哺乳动物细胞中特异性标记 RNA 的超分辨 STED 图像代表了重大进展。RhoBAST:SpyRho 的多功能性还通过对内源性染色体位点和蛋白质的成像得到进一步证明。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a725/10313827/0fde50eab0c9/41467_2023_39611_Fig1_HTML.jpg

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