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虚拟筛选、分子对接和动态模拟揭示 TGF-β1 潜在抑制剂抑制宫颈癌进展。

Virtual Screening, Molecular Docking, and Dynamic Simulations Revealed TGF-β1 Potential Inhibitors to Curtail Cervical Cancer Progression.

机构信息

Department of Genetics & Biotechnology, University College of Science, Osmania University, Hyderabad, Telangana, 500007, India.

Department of Bioinformatics, SVIMS University, Tirupati, Andhra Pradesh, 517 507, India.

出版信息

Appl Biochem Biotechnol. 2024 Mar;196(3):1316-1349. doi: 10.1007/s12010-023-04608-5. Epub 2023 Jul 1.

Abstract

Cervical cancer is one of the main causes of cancer death in women globally, and its epidemiology is similar to that of a low-infectious venereal illness. Many sexual partners and early age at first intercourse have been demonstrated to have a significant influence on risk. TGF-β1 is a multifunctional cytokine that is required for cervical carcinoma metastasis, tumor development, progression, and invasion. The TGF-β1 signaling system plays a paradoxical function in cancer formation, suppressing early-stage tumor growth while increasing tumor progression and metastasis. Importantly, TGF-β1 and TGF-β receptor 1 (TGF-βR1), two components of the TGF-β signaling system, are substantially expressed in a range of cancers, including breast cancer, colon cancer, gastric cancer, and hepatocellular carcinoma. The current study aims to investigate possible inhibitors targeting TGF-β1 using molecular docking and dynamic simulations. To target TGF-β1, we used anti-cancer drugs and small molecules. MVD was utilized for virtual screening, and the highest scoring compound was then subjected to MD simulations using Schrodinger software package v2017-1 (Maestro v11.1) to identify the most favorable lead interactions against TGF-β1. The Nilotinib compound has shown the least XP Gscore of -2.581 kcal/mol, 30ns MD simulations revealing that the Nilotinib- TGF-β1 complex possesses the lowest energy of -77784.917 kcal/mol. Multiple parameters, including Root Mean Square Deviation, Root Mean Square Fluctuation, and Intermolecular Interactions, were used to analyze the simulation trajectory. Based on the results; we conclude that the ligand nilotinib appears to be a promising prospective TGF-β1inhibitor for reducing TGF-β1 expression ad halting cervical cancer progression.

摘要

宫颈癌是全球女性癌症死亡的主要原因之一,其流行病学与低传染性性病相似。多个性伴侣和初次性交年龄较小已被证明对风险有重大影响。TGF-β1 是一种多功能细胞因子,是宫颈癌转移、肿瘤发生、发展和侵袭所必需的。TGF-β1 信号系统在癌症形成中起着矛盾的作用,抑制早期肿瘤生长,同时增加肿瘤进展和转移。重要的是,TGF-β1 和 TGF-β 受体 1(TGF-βR1)是 TGF-β 信号系统的两个组成部分,在多种癌症中都有大量表达,包括乳腺癌、结肠癌、胃癌和肝癌。本研究旨在利用分子对接和动态模拟研究针对 TGF-β1 的可能抑制剂。为了针对 TGF-β1,我们使用了抗癌药物和小分子。MVD 用于虚拟筛选,然后使用 Schrödinger 软件包 v2017-1(Maestro v11.1)对得分最高的化合物进行 MD 模拟,以确定针对 TGF-β1 的最有利的先导相互作用。尼罗替尼化合物表现出最低的 XP Gscore 为-2.581 kcal/mol,30ns MD 模拟表明尼罗替尼-TGF-β1 复合物具有最低的能量为-77784.917 kcal/mol。多种参数,包括均方根偏差、均方根波动和分子间相互作用,用于分析模拟轨迹。基于这些结果,我们得出结论,配体尼罗替尼似乎是一种有前途的 TGF-β1 抑制剂,可降低 TGF-β1 的表达并阻止宫颈癌的进展。

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