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融合结晶揭示了1TEL结晶伴侣蛋白和TNK1泛素结合结构域的行为。

Fusion crystallization reveals the behavior of both the 1TEL crystallization chaperone and the TNK1 UBA domain.

作者信息

Nawarathnage Supeshala, Tseng Yi Jie, Soleimani Sara, Smith Tobin, Romo Maria J Pedroza, Abiodun Wisdom Oshireku, Egbert Christina M, Madhusanka Deshan, Bunn Derick, Woods Bridger, Tsubaki Evan, Stewart Cameron, Brown Seth, Doukov Tzanko, Andersen Joshua L, Moody James D

机构信息

Department of Chemistry and Biochemistry, Brigham Young University, Provo, Utah, United States of America.

These authors contributed equally to this work.

出版信息

bioRxiv. 2023 Jun 14:2023.06.14.544429. doi: 10.1101/2023.06.14.544429.

Abstract

Human thirty-eight-negative kinase-1 (TNK1) is implicated in cancer progression. The TNK1-UBA domain binds polyubiquitin and plays a regulatory role in TNK1 activity and stability. Sequence analysis suggests an unusual architecture for the TNK1 UBA domain, but an experimentally-validated molecular structure is undetermined. To gain insight into TNK1 regulation, we fused the UBA domain to the 1TEL crystallization chaperone and obtained crystals diffracting as far as 1.53 Å. A 1TEL search model enabled solution of the X-ray phases. GG and GSGG linkers allowed the UBA to reproducibly find a productive binding mode against its host 1TEL polymer and to crystallize at protein concentrations as low as 0.1 mg/mL. Our studies support a mechanism of TELSAM fusion crystallization and show that TELSAM fusion crystals require fewer crystal contacts than traditional protein crystals. Modeling and experimental validation suggest the UBA domain may be selective for both the length and linkages of polyubiquitin chains.

摘要

人38-负激酶-1(TNK1)与癌症进展有关。TNK1-UBA结构域结合多聚泛素,并在TNK1活性和稳定性中发挥调节作用。序列分析表明TNK1 UBA结构域具有不同寻常的结构,但尚未确定经过实验验证的分子结构。为深入了解TNK1的调控机制,我们将UBA结构域与1TEL结晶伴侣融合,获得了衍射至1.53 Å的晶体。一个1TEL搜索模型使得能够解析X射线相位。GG和GSGG接头使UBA能够以可重复的方式找到针对其宿主1TEL聚合物的有效结合模式,并在低至0.1 mg/mL的蛋白质浓度下结晶。我们的研究支持TELSAM融合结晶机制,并表明TELSAM融合晶体比传统蛋白质晶体需要更少的晶体接触。建模和实验验证表明,UBA结构域可能对多聚泛素链的长度和连接方式具有选择性。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3a79/10312729/01f07b9eb680/nihpp-2023.06.14.544429v1-f0001.jpg

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