• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

基于点击编码测序 v2.0 技术对氧化 DNA 损伤进行单核苷酸分辨率测序

Sequencing for oxidative DNA damage at single-nucleotide resolution with click-code-seq v2.0.

机构信息

Department of Chemistry, University of Utah, 315 S. 1400 East, Salt Lake City, UT 84112-0850, USA.

出版信息

Chem Commun (Camb). 2023 Jul 18;59(58):8997-9000. doi: 10.1039/d3cc02699j.

DOI:10.1039/d3cc02699j
PMID:37401666
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10909242/
Abstract

Oxidative damage to DNA nucleotides has many cellular outcomes that could be aided by the development of sequencing methods. Herein, the previously reported click-code-seq method for sequencing a single damage type is redeveloped to enable the sequencing of many damage types by making simple changes to the protocol (, click-code-seq v2.0).

摘要

DNA 核苷酸的氧化损伤有许多细胞后果,可以通过开发测序方法来辅助。在此,重新开发了先前报道的点击编码测序方法,以通过对方案进行简单的更改来实现多种损伤类型的测序(,点击编码测序 v2.0)。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8df2/10909242/5c73c910a366/nihms-1969256-f0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8df2/10909242/159fc87e5dde/nihms-1969256-f0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8df2/10909242/232b5b532871/nihms-1969256-f0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8df2/10909242/5c73c910a366/nihms-1969256-f0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8df2/10909242/159fc87e5dde/nihms-1969256-f0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8df2/10909242/232b5b532871/nihms-1969256-f0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8df2/10909242/5c73c910a366/nihms-1969256-f0003.jpg

相似文献

1
Sequencing for oxidative DNA damage at single-nucleotide resolution with click-code-seq v2.0.基于点击编码测序 v2.0 技术对氧化 DNA 损伤进行单核苷酸分辨率测序
Chem Commun (Camb). 2023 Jul 18;59(58):8997-9000. doi: 10.1039/d3cc02699j.
2
Nucleotide-Resolution Genome-Wide Mapping of Oxidative DNA Damage by Click-Code-Seq.通过点击代码测序进行核苷酸分辨率全基因组氧化 DNA 损伤作图
J Am Chem Soc. 2018 Aug 8;140(31):9783-9787. doi: 10.1021/jacs.8b03715. Epub 2018 Jul 26.
3
Expanded genetic codes in next generation sequencing enable decontamination and mitochondrial enrichment.下一代测序中扩展的遗传密码可实现污染去除和线粒体富集。
PLoS One. 2014 May 2;9(5):e96492. doi: 10.1371/journal.pone.0096492. eCollection 2014.
4
Correcting nucleotide-specific biases in high-throughput sequencing data.校正高通量测序数据中的核苷酸特异性偏差。
BMC Bioinformatics. 2017 Aug 1;18(1):357. doi: 10.1186/s12859-017-1766-x.
5
Genome-wide analysis of 8-oxo-7,8-dihydro-2'-deoxyguanosine at single-nucleotide resolution unveils reduced occurrence of oxidative damage at G-quadruplex sites.单核苷酸分辨率全基因组分析 8-氧代-7,8-二氢-2'-脱氧鸟苷揭示 G-四链体位点氧化损伤减少。
Nucleic Acids Res. 2021 Dec 2;49(21):12252-12267. doi: 10.1093/nar/gkab1022.
6
RADAR-seq: A RAre DAmage and Repair sequencing method for detecting DNA damage on a genome-wide scale.RADAR-seq:一种用于在全基因组范围内检测 DNA 损伤的罕见损伤和修复测序方法。
DNA Repair (Amst). 2019 Aug;80:36-44. doi: 10.1016/j.dnarep.2019.06.007. Epub 2019 Jun 20.
7
Quantum Point Contact Single-Nucleotide Conductance for DNA and RNA Sequence Identification.量子点接触单核苷酸电导用于 DNA 和 RNA 序列鉴定。
ACS Nano. 2017 Nov 28;11(11):11169-11181. doi: 10.1021/acsnano.7b05500. Epub 2017 Oct 6.
8
Cisplatin DNA damage and repair maps of the human genome at single-nucleotide resolution.单核苷酸分辨率下人类基因组的顺铂DNA损伤与修复图谱。
Proc Natl Acad Sci U S A. 2016 Oct 11;113(41):11507-11512. doi: 10.1073/pnas.1614430113. Epub 2016 Sep 29.
9
Oxidative Bisulfite Sequencing: An Experimental and Computational Protocol.氧化亚硫酸氢盐测序:实验与计算方案
Methods Mol Biol. 2021;2198:333-348. doi: 10.1007/978-1-0716-0876-0_26.
10
Resolving Breakpoints of Chromosomal Rearrangements at the Nucleotide Level Using Sanger Sequencing.利用 Sanger 测序技术在核苷酸水平上解决染色体重排的断点。
Curr Protoc Hum Genet. 2020 Dec;108(1):e107. doi: 10.1002/cphg.107.

引用本文的文献

1
Single-cell parallel analysis of DNA damage and transcriptome reveals selective genome vulnerability.DNA损伤与转录组的单细胞平行分析揭示了选择性基因组脆弱性。
Nat Methods. 2025 May;22(5):962-972. doi: 10.1038/s41592-025-02632-3. Epub 2025 Mar 24.

本文引用的文献

1
Click Chemistry Enables Rapid Amplification of Full-Length Reverse Transcripts for Long-Read Third Generation Sequencing.点击化学能够快速扩增全长反转录产物,用于第三代长读长测序。
Bioconjug Chem. 2022 Oct 19;33(10):1789-1795. doi: 10.1021/acs.bioconjchem.2c00353. Epub 2022 Sep 26.
2
DNA-Protein Cross-Linking Sequencing for Genome-Wide Mapping of Thymidine Glycol.DNA-蛋白质交联测序技术用于胸苷二醇的全基因组图谱绘制。
J Am Chem Soc. 2022 Jan 12;144(1):454-462. doi: 10.1021/jacs.1c10490. Epub 2022 Jan 3.
3
From single-molecule to genome-wide mapping of DNA lesions: repair-assisted damage detection sequencing.从DNA损伤的单分子映射到全基因组映射:修复辅助损伤检测测序
Biophys Rep (N Y). 2021 Dec 8;1(2):None. doi: 10.1016/j.bpr.2021.100017.
4
Caught in motion: human NTHL1 undergoes interdomain rearrangement necessary for catalysis.处于运动中:人类 NTHL1 发生结构域重排,这是催化所必需的。
Nucleic Acids Res. 2021 Dec 16;49(22):13165-13178. doi: 10.1093/nar/gkab1162.
5
Genome-wide analysis of 8-oxo-7,8-dihydro-2'-deoxyguanosine at single-nucleotide resolution unveils reduced occurrence of oxidative damage at G-quadruplex sites.单核苷酸分辨率全基因组分析 8-氧代-7,8-二氢-2'-脱氧鸟苷揭示 G-四链体位点氧化损伤减少。
Nucleic Acids Res. 2021 Dec 2;49(21):12252-12267. doi: 10.1093/nar/gkab1022.
6
On the irrelevancy of hydroxyl radical to DNA damage from oxidative stress and implications for epigenetics.羟自由基与氧化应激导致的 DNA 损伤无关及其对表观遗传学的影响。
Chem Soc Rev. 2020 Sep 21;49(18):6524-6528. doi: 10.1039/d0cs00579g.
7
Nick-seq for single-nucleotide resolution genomic maps of DNA modifications and damage.Nick-seq 用于单核苷酸分辨率的 DNA 修饰和损伤的基因组图谱。
Nucleic Acids Res. 2020 Jul 9;48(12):6715-6725. doi: 10.1093/nar/gkaa473.
8
Nanopore Sequencing of an Expanded Genetic Alphabet Reveals High-Fidelity Replication of a Predominantly Hydrophobic Unnatural Base Pair.纳米孔测序扩展的遗传密码揭示了主要疏水性非天然碱基对的高保真复制。
J Am Chem Soc. 2020 Feb 5;142(5):2110-2114. doi: 10.1021/jacs.9b09808. Epub 2020 Jan 27.
9
Interplay of Guanine Oxidation and G-Quadruplex Folding in Gene Promoters.鸟嘌呤氧化与基因启动子中 G-四链体折叠的相互作用。
J Am Chem Soc. 2020 Jan 22;142(3):1115-1136. doi: 10.1021/jacs.9b11050. Epub 2020 Jan 9.
10
Genome-Wide Mapping of Oxidative DNA Damage via Engineering of 8-Oxoguanine DNA Glycosylase.通过 8-氧鸟嘌呤 DNA 糖基化酶的工程化实现全基因组范围的氧化 DNA 损伤绘图。
Biochemistry. 2020 Jan 14;59(1):85-89. doi: 10.1021/acs.biochem.9b00782. Epub 2019 Oct 25.