Department of Physics, Gazi University, Ankara, Turkey.
Instituto de Tecnología Química, Universitat Politécnica de Valéncia, Valencia, Spain.
J Cell Mol Med. 2023 Aug;27(15):2249-2260. doi: 10.1111/jcmm.17831. Epub 2023 Jul 4.
In the present study, the identification of potential α-amylase inhibitors is explored as a potential strategy for treating type-2 diabetes mellitus. A computationally driven approach using molecular docking was employed to search for new α-amylase inhibitors. The interactions of potential drugs with the enzyme's active site were investigated and compared with the contacts established by acarbose (a reference drug for α-amylase inhibition) in the crystallographic structure 1B2Y. For this active site characterization, both molecular docking and molecular dynamics simulations were performed, and the residues involved in the α-amylase-acarbose complex were considered to analyse the potential drug's interaction with the enzyme. Two potential α-amylase inhibitors (AN-153I105594 and AN-153I104845) have been selected following this computational strategy. Both compounds established a large number of interactions with key binding site α-amylase amino acids and obtained a comparable docking score concerning the reference drug (acarbose). Aiming to further analyse candidates' properties, their ADME (absorption, distribution, metabolism, excretion) parameters, druglikeness, organ toxicity, toxicological endpoints and median lethal dose (LD ) were estimated. Overall estimations are promising for both candidates, and in silico toxicity predictions suggest that a low toxicity should be expected.
在本研究中,探索了鉴定潜在的α-淀粉酶抑制剂作为治疗 2 型糖尿病的潜在策略。使用基于分子对接的计算方法来寻找新的α-淀粉酶抑制剂。研究了潜在药物与酶的活性位点的相互作用,并与晶体结构 1B2Y 中阿卡波糖(α-淀粉酶抑制的参考药物)的接触进行了比较。为了进行该活性位点表征,进行了分子对接和分子动力学模拟,并考虑了与α-淀粉酶-阿卡波糖复合物相关的残基,以分析潜在药物与酶的相互作用。根据这种计算策略,选择了两种潜在的α-淀粉酶抑制剂(AN-153I105594 和 AN-153I104845)。这两种化合物都与关键结合位点α-淀粉酶氨基酸建立了大量相互作用,并获得了与参考药物(阿卡波糖)相当的对接评分。为了进一步分析候选物的性质,估算了它们的 ADME(吸收、分布、代谢、排泄)参数、类药性、器官毒性、毒理学终点和半数致死剂量(LD)。这两种候选物的总体估算结果都很有前景,并且计算机毒性预测表明,它们的毒性应该较低。