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OPLS3e:扩展适用于类药物小分子的力场覆盖范围。

OPLS3e: Extending Force Field Coverage for Drug-Like Small Molecules.

机构信息

Department of Chemistry , Columbia University , 3000 Broadway , New York , New York 10027 , United States.

Department of Cell and Molecular Biology , Uppsala University , Biomedical Centre, Box 596, SE-751 24 Uppsala , Sweden.

出版信息

J Chem Theory Comput. 2019 Mar 12;15(3):1863-1874. doi: 10.1021/acs.jctc.8b01026. Epub 2019 Mar 4.

Abstract

Building upon the OPLS3 force field we report on an enhanced model, OPLS3e, that further extends its coverage of medicinally relevant chemical space by addressing limitations in chemotype transferability. OPLS3e accomplishes this by incorporating new parameter types that recognize moieties with greater chemical specificity and integrating an on-the-fly parametrization approach to the assignment of partial charges. As a consequence, OPLS3e leads to greater accuracy against performance benchmarks that assess small molecule conformational propensities, solvation, and protein-ligand binding.

摘要

在 OPLS3 力场的基础上,我们报告了一个增强模型 OPLS3e,通过解决化学型可转移性的限制,进一步扩展了其在医学相关化学空间的覆盖范围。OPLS3e 通过引入新的参数类型来实现这一点,这些参数类型可以识别具有更高化学特异性的部分,并整合了一种实时参数化方法来分配部分电荷。因此,OPLS3e 在评估小分子构象倾向、溶剂化和蛋白质-配体结合的性能基准方面具有更高的准确性。

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