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不同溶剂条件下吲哚和二氯甲烷之间非共价相互作用的证据。

Evidences of noncovalent interactions between indole and dichloromethane under different solvent conditions.

机构信息

Department of Chemistry, College of Science, Princess Nourah Bint Abdulrahman University, P.O. Box 84428, Riyadh, 11671, Saudi Arabia.

Thushara, Neethinagar-64, Kollam, Kerala, India.

出版信息

J Mol Model. 2023 Jul 13;29(8):246. doi: 10.1007/s00894-023-05623-3.

Abstract

CONTEXT

Theoretical investigation of indole (IND) and its binary combination with dichloromethane (DC) in various solvents were computed to track the impact of molecular interactions on spectral characteristics. When transitioning from plain drug to complexes, different modes of IND display a substantial shift in peak location. The 3561.26 cm band shows (~15.58 cm) red shift upon dilution. The geometry in various solvents was calculated using quantum chemical calculation utilizing density functional theory (DFT). The highest ALIE values are located at the indole skeleton and on complexation with DC, and the ring atoms become more electron rich. The atom-centered density matrix propagation (ADMP) molecular dynamic (MD) calculation shows that the geometries optimized through the DFT calculation match the global minima effectively. MD simulations indicate that indole is more stable in water and methanol.

METHODS

DFT studies have been employed to study the interaction between indole and dichloromethane. CAM-B3LYP/6-311++G(d)(6D,7F) level of theory was employed using Gaussian 16 W suite. Quantum topological descriptors were discussed using quantum theory of atoms in molecules (QTAIM) with the help of Multiwfn software. Reduced density gradient (RDG) plot describes the nature of the interaction, while average local ionization energy (ALIE) explained the variation in local ionization energy of the molecular surface before and after complexation.

摘要

背景

为了追踪分子相互作用对光谱特征的影响,我们对吲哚(IND)及其与二氯甲烷(DC)的二元混合物在各种溶剂中的理论进行了研究。当从纯药物转变为复合物时,IND 的不同模式显示出峰位的明显移动。3561.26cm-1 带在稀释时显示出约 15.58cm 的红移。在各种溶剂中的几何形状是使用量子化学计算(利用密度泛函理论(DFT))计算的。最高的 ALIE 值位于吲哚骨架上,与 DC 络合时,环原子变得更加富电子。基于原子的密度矩阵传播(ADMP)分子动力学(MD)计算表明,通过 DFT 计算优化的几何形状有效地匹配全局最小值。MD 模拟表明,吲哚在水和甲醇中更稳定。

方法

使用 Gaussian 16 W 套件,采用 DFT 研究了吲哚与二氯甲烷之间的相互作用。使用 CAM-B3LYP/6-311++G(d)(6D,7F)理论水平。借助 Multiwfn 软件,使用原子在分子中的量子理论(QTAIM)讨论了量子拓扑描述符。简化密度梯度(RDG)图描述了相互作用的性质,而平均局部电离能(ALIE)解释了络合前后分子表面局部电离能的变化。

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