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通过第一性原理模拟研究瑞派替尼中新型严重急性呼吸综合征冠状病毒2蛋白的激发态电子性质、结构、非共价相互作用及抑制作用

Excited-state electronic properties, structural studies, noncovalent interactions, and inhibition of the novel severe acute respiratory syndrome coronavirus 2 proteins in Ripretinib by first-principle simulations.

作者信息

Alharthi Fahad A, Al-Zaqri Nabil, Alsalme Ali, Al-Taleb Afnan, Pooventhiran T, Thomas Renjith, Rao D Jagadeeswara

机构信息

Department of Chemistry, College of Science, King Saud University, P.O. Box 2455, Riyadh 11451, Saudi Arabia.

Department of Chemistry, St. Berchmans College (Autonomous), Changanassery, Kerala, India.

出版信息

J Mol Liq. 2021 Feb 15;324:115134. doi: 10.1016/j.molliq.2020.115134. Epub 2020 Dec 27.

Abstract

Ripretinib is a recently developed drug for the treatment of adults with advanced gastrointestinal stromal tumors. This paper reports an attempt to study this molecule by electronic modeling and molecular mechanics to determine its composition and other specific chemical features via the density-functional theory (DFT), thereby affording sufficient information on the electronic properties and descriptors that can enable the estimation of its molecular bioactivity. We explored most of the physico-chemical properties of the molecule, as well as its stabilization, via the studies of the natural bond orbitals and noncovalent interactions. The electronic excitation, which is a time-dependent process, was examined by the time-dependent DFT with a CAM-B3LYP functional. The molecular docking study indicated that Ripretinib strongly docks with three known novel severe acute respiratory syndrome coronavirus 2 (SARS-n-CoV-2) proteins with a reasonably good docking score.

摘要

瑞派替尼是一种最近开发的用于治疗晚期胃肠道间质瘤成人患者的药物。本文报道了一项通过电子建模和分子力学研究该分子的尝试,以通过密度泛函理论(DFT)确定其组成和其他特定化学特征,从而提供有关电子性质和描述符的充分信息,以便能够估计其分子生物活性。我们通过研究自然键轨道和非共价相互作用,探索了该分子的大部分物理化学性质及其稳定性。电子激发是一个随时间变化的过程,通过使用CAM-B3LYP泛函的含时密度泛函理论进行了研究。分子对接研究表明,瑞派替尼与三种已知的新型严重急性呼吸综合征冠状病毒2(SARS-CoV-2)蛋白强烈对接,对接分数相当不错。

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