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豆科作物固有遗传变异性及进化关系的评估

Assessment of Genetic Variability and Evolutionary Relationships of Inherent in Legume Crops.

作者信息

Abbas Aqleem, Ali Amjad, Hussain Azhar, Ali Amjad, Alrefaei Abdulwahed Fahad, Naqvi Syed Atif Hasan, Rao Muhammad Junaid, Mubeen Iqra, Farooq Tahir, Ölmez Fatih, Baloch Faheem Shehzad

机构信息

Department of Agriculture and Food Technology, Karakoram International University (KIU), Gilgit 15100, Pakistan.

Department of Plant Protection, Faculty of Agricultural Sciences and Technologies, Sivas University of Science and Technology, Sivas 58140, Türkiye.

出版信息

Plants (Basel). 2023 Jun 30;12(13):2515. doi: 10.3390/plants12132515.

DOI:10.3390/plants12132515
PMID:37447079
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10347096/
Abstract

is one of the most common soil-borne fungal pathogens of legume crops worldwide. We collected rDNA-ITS sequences from NCBI GenBank, and the aim of this study was to examine the genetic diversity and phylogenetic relationships of various anastomosis groups (AGs) that are commonly associated with grain legumes (such as soybean, common bean, pea, peanut, cowpea, and chickpea) and forage legumes (including alfalfa and clover). Soybean is recognized as a host for multiple AGs, with AG-1 and AG-2 being extensively investigated. This is evidenced by the higher representation of sequences associated with these AGs in the NCBI GenBank. Other AGs documented in soybean include AG-4, AG-7, AG-11, AG-5, AG-6, and AG-9. Moreover, AG-4 has been extensively studied concerning its occurrence in chickpea, pea, peanut, and alfalfa. Research on the common bean has been primarily focused on AG-2, AG-4, and AG-1. Similarly, AG-1 has been the subject of extensive investigation in clover and cowpea. Collectively, AG-1, AG-2, and AG-4 have consistently been identified and studied across these diverse legume crops. The phylogenetic analysis of isolates across different legumes indicates that the distinct clades or subclades formed by the isolates correspond to their specific anastomosis groups (AGs) and subgroups, rather than being determined by their host legume crop. Additionally, there is a high degree of sequence similarity among isolates within the same clade or subclade. Principal coordinate analysis (PCoA) further supports this finding, as isolates belonging to the same AGs and/or subgroups cluster together, irrespective of their host legume. Therefore, the observed clustering of AGs and subgroups without a direct association with the host legume crop provides additional support for the concept of AGs in understanding the genetic relationships and evolution of .

摘要

是全球豆类作物中最常见的土传真菌病原体之一。我们从NCBI基因库中收集了rDNA-ITS序列,本研究的目的是研究与食用豆类(如大豆、菜豆、豌豆、花生、豇豆和鹰嘴豆)和饲用豆类(包括苜蓿和三叶草)相关的各种融合群(AGs)的遗传多样性和系统发育关系。大豆被认为是多种AGs的寄主,其中AG-1和AG-2已得到广泛研究。NCBI基因库中与这些AGs相关的序列占比更高,证明了这一点。大豆中记录的其他AGs包括AG-4、AG-7、AG-11、AG-5、AG-6和AG-9。此外,关于AG-4在鹰嘴豆、豌豆、花生和苜蓿中的发生情况也进行了广泛研究。对菜豆的研究主要集中在AG-2、AG-4和AG-1上。同样,AG-1一直是苜蓿和豇豆广泛研究的对象。总体而言,AG-1、AG-2和AG-4在这些不同的豆类作物中一直被识别和研究。对不同豆类分离株的系统发育分析表明,分离株形成的不同分支或亚分支与其特定的融合群(AGs)和亚群相对应,而不是由其寄主豆类作物决定。此外,同一分支或亚分支内分离株之间的序列相似性很高。主坐标分析(PCoA)进一步支持了这一发现,因为属于同一AGs和/或亚群的分离株聚集在一起,而不管其寄主豆类是什么。因此,观察到的AGs和亚群的聚类与寄主豆类作物没有直接关联,这为AGs在理解遗传关系和进化中的概念提供了额外支持。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3888/10347096/7bc7260d74ec/plants-12-02515-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3888/10347096/552fd6027da0/plants-12-02515-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3888/10347096/a8d65f210ac0/plants-12-02515-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3888/10347096/def0ee91d802/plants-12-02515-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3888/10347096/739da5ce39c3/plants-12-02515-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3888/10347096/7bc7260d74ec/plants-12-02515-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3888/10347096/552fd6027da0/plants-12-02515-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3888/10347096/a8d65f210ac0/plants-12-02515-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3888/10347096/def0ee91d802/plants-12-02515-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3888/10347096/739da5ce39c3/plants-12-02515-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3888/10347096/7bc7260d74ec/plants-12-02515-g005.jpg

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