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玉米中电压依赖性阴离子通道(VDAC)家族的鉴定与特征分析

Identification and Characterization of VDAC Family in Maize.

作者信息

Rodríguez-Saavedra Carolina, García-Ortiz Donají Azucena, Burgos-Palacios Andrés, Morgado-Martínez Luis Enrique, King-Díaz Beatriz, Guevara-García Ángel Arturo, Sánchez-Nieto Sobeida

机构信息

Laboratorio de Transporte y Percepción de Azúcares en Plantas, Departamento de Bioquímica, Facultad de Química, Universidad Nacional Autónoma de México, Ciudad de México C.P. 04510, Mexico.

Departamento de Biología Molecular de Plantas, Instituto de Biotecnología, Universidad Nacional Autónoma de México, Cuernavaca C.P. 62209, Mexico.

出版信息

Plants (Basel). 2023 Jul 4;12(13):2542. doi: 10.3390/plants12132542.

DOI:10.3390/plants12132542
PMID:37447103
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10346152/
Abstract

The voltage-dependent anion channel (VDAC) is the most abundant protein in the outer mitochondrial membrane (OMM) of all eukaryotes, having an important role in the communication between mitochondria and cytosol. The plant VDAC family consists of a wide variety of members that may participate in cell responses to several environmental stresses. However, there is no experimental information about the members comprising the maize VDAC (ZmVDAC) family. In this study, the family was identified, and described, and its gene transcription profile was explored during the first six days of germination and under different biotic stress stimuli. Nine members were proposed as VDAC genes with a high potential to code functional VDAC proteins. Each member of the family was characterized in silico, and nomenclature was proposed according to phylogenetic relationships. Transcript levels in coleoptiles showed a different pattern of expression for each gene, suggesting specific roles for each one during seedling development. This expression profile changed under infection and salicylic acid, methyl jasmonate, and gibberellic acid treatments, suggesting no redundancy for the nine genes and, thus, probably specific and diverse functions according to plant needs and environmental conditions. Nevertheless, was significantly upregulated upon biotic stress signals, suggesting this gene's potential role during the biotic stress response.

摘要

电压依赖性阴离子通道(VDAC)是所有真核生物线粒体外膜(OMM)中含量最丰富的蛋白质,在线粒体与细胞质之间的通讯中发挥着重要作用。植物VDAC家族由多种成员组成,这些成员可能参与细胞对多种环境胁迫的反应。然而,关于构成玉米VDAC(ZmVDAC)家族的成员,尚无实验信息。在本研究中,对该家族进行了鉴定和描述,并探究了其在萌发的前六天以及不同生物胁迫刺激下的基因转录谱。九个成员被认定为具有编码功能性VDAC蛋白高潜力的VDAC基因。对该家族的每个成员进行了电子计算机分析,并根据系统发育关系提出了命名法。胚芽鞘中的转录水平显示每个VDAC基因具有不同的表达模式,表明每个基因在幼苗发育过程中具有特定作用。在感染以及水杨酸、茉莉酸甲酯和赤霉素处理下,这种表达谱发生了变化,这表明这九个VDAC基因不存在冗余,因此,可能根据植物需求和环境条件具有特定且多样的功能。尽管如此,在生物胁迫信号作用下,某个基因显著上调,表明该基因在生物胁迫反应中具有潜在作用。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cf9f/10346152/c3913de7f394/plants-12-02542-g008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cf9f/10346152/af452bc32f9d/plants-12-02542-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cf9f/10346152/24ab857caf8b/plants-12-02542-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cf9f/10346152/2a95555f1233/plants-12-02542-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cf9f/10346152/8e6c01ac3a7d/plants-12-02542-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cf9f/10346152/8c50208fc10c/plants-12-02542-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cf9f/10346152/0d377df3b87d/plants-12-02542-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cf9f/10346152/1adba44a80ca/plants-12-02542-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cf9f/10346152/c3913de7f394/plants-12-02542-g008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cf9f/10346152/af452bc32f9d/plants-12-02542-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cf9f/10346152/24ab857caf8b/plants-12-02542-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cf9f/10346152/2a95555f1233/plants-12-02542-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cf9f/10346152/8e6c01ac3a7d/plants-12-02542-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cf9f/10346152/8c50208fc10c/plants-12-02542-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cf9f/10346152/0d377df3b87d/plants-12-02542-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cf9f/10346152/1adba44a80ca/plants-12-02542-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cf9f/10346152/c3913de7f394/plants-12-02542-g008.jpg

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本文引用的文献

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Identification of Resistance Alleles in Three Maize Populations With Teosinte Gene Introgression.在三个渗入大刍草基因的玉米群体中鉴定抗性等位基因
Front Plant Sci. 2022 Jul 14;13:942397. doi: 10.3389/fpls.2022.942397. eCollection 2022.
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How do plants defend themselves against pathogens-Biochemical mechanisms and genetic interventions.植物如何抵御病原体——生化机制与基因干预
Physiol Mol Biol Plants. 2022 Feb;28(2):485-504. doi: 10.1007/s12298-022-01146-y. Epub 2022 Mar 7.
3
AlphaFold Protein Structure Database: massively expanding the structural coverage of protein-sequence space with high-accuracy models.
AlphaFold 蛋白质结构数据库:用高精度模型极大地扩展蛋白质序列空间的结构覆盖范围。
Nucleic Acids Res. 2022 Jan 7;50(D1):D439-D444. doi: 10.1093/nar/gkab1061.
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Characterization of the voltage-dependent anion channel (VDAC) gene family in wheat (Triticum aestivum L.) and its potential mechanism in response to drought and salinity stresses.小麦(Triticum aestivum L.)电压依赖性阴离子通道(VDAC)基因家族的特征及其对干旱和盐胁迫响应的潜在机制。
Gene. 2022 Jan 30;809:146031. doi: 10.1016/j.gene.2021.146031. Epub 2021 Oct 19.
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Voltage-Dependent Anion-Selective Channels and Other Mitochondrial Membrane Proteins Form Diverse Complexes in Beetroots Subjected to Flood-Induced Programmed Cell Death.电压依赖性阴离子选择通道和其他线粒体膜蛋白在遭受水淹诱导程序性细胞死亡的甜菜根中形成多种复合物。
Front Plant Sci. 2021 Sep 8;12:714847. doi: 10.3389/fpls.2021.714847. eCollection 2021.
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VDACs: An Outlook on Biochemical Regulation and Function in Animal and Plant Systems.电压依赖性阴离子通道:动植物系统中生化调节与功能的展望
Front Physiol. 2021 Aug 5;12:683920. doi: 10.3389/fphys.2021.683920. eCollection 2021.
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The Role of Voltage-Dependent Anion Channel in Mitochondrial Dysfunction and Human Disease.电压门控阴离子通道在线粒体功能障碍和人类疾病中的作用。
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Nature. 2021 Aug;596(7873):583-589. doi: 10.1038/s41586-021-03819-2. Epub 2021 Jul 15.
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