三叉神经节和背根神经节的跨物种统一细胞图谱

Harmonized cross-species cell atlases of trigeminal and dorsal root ganglia.

作者信息

Bhuiyan Shamsuddin A, Xu Mengyi, Yang Lite, Semizoglou Evangelia, Bhatia Parth, Pantaleo Katerina I, Tochitsky Ivan, Jain Aakanksha, Erdogan Burcu, Blair Steven, Cat Victor, Mwirigi Juliet M, Sankaranarayanan Ishwarya, Tavares-Ferreira Diana, Green Ursula, McIlvried Lisa A, Copits Bryan A, Bertels Zachariah, Del Rosario John S, Widman Allie J, Slivicki Richard A, Yi Jiwon, Woolf Clifford J, Lennerz Jochen K, Whited Jessica L, Price Theodore J, Gereau Robert W, Renthal William

机构信息

Department of Neurology, Brigham and Women's Hospital and Harvard Medical School, Boston, MA 02115, USA.

Alan Edwards Center for Research on Pain and Department of Physiology, McGill University, Montreal, QC, H3G 1Y6, Canada.

出版信息

bioRxiv. 2023 Jul 5:2023.07.04.547740. doi: 10.1101/2023.07.04.547740.

Abstract

Peripheral sensory neurons in the dorsal root ganglion (DRG) and trigeminal ganglion (TG) are specialized to detect and transduce diverse environmental stimuli including touch, temperature, and pain to the central nervous system. Recent advances in single-cell RNA-sequencing (scRNA-seq) have provided new insights into the diversity of sensory ganglia cell types in rodents, non-human primates, and humans, but it remains difficult to compare transcriptomically defined cell types across studies and species. Here, we built cross-species harmonized atlases of DRG and TG cell types that describe 18 neuronal and 11 non-neuronal cell types across 6 species and 19 studies. We then demonstrate the utility of this harmonized reference atlas by using it to annotate newly profiled DRG nuclei/cells from both human and the highly regenerative axolotl. We observe that the transcriptomic profiles of sensory neuron subtypes are broadly similar across vertebrates, but the expression of functionally important neuropeptides and channels can vary notably. The new resources and data presented here can guide future studies in comparative transcriptomics, simplify cell type nomenclature differences across studies, and help prioritize targets for future pain therapy development.

摘要

背根神经节(DRG)和三叉神经节(TG)中的外周感觉神经元专门用于检测各种环境刺激,并将其转化为触觉、温度觉和痛觉等信息传递给中枢神经系统。单细胞RNA测序(scRNA-seq)的最新进展为啮齿动物、非人灵长类动物和人类感觉神经节细胞类型的多样性提供了新的见解,但跨研究和物种比较转录组学定义的细胞类型仍然很困难。在这里,我们构建了DRG和TG细胞类型的跨物种协调图谱,描述了6个物种和19项研究中的18种神经元和11种非神经元细胞类型。然后,我们通过使用该协调参考图谱注释来自人类和高度可再生的蝾螈的新分析的DRG细胞核/细胞,展示了其效用。我们观察到,感觉神经元亚型的转录组谱在脊椎动物中大致相似,但功能重要的神经肽和通道的表达可能会有显著差异。本文提供的新资源和数据可以指导未来的比较转录组学研究,简化跨研究的细胞类型命名差异,并有助于确定未来疼痛治疗开发的优先靶点。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5bd0/10350076/9ea54a1c61e2/nihpp-2023.07.04.547740v2-f0001.jpg

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