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鸡和鼠内耳的种间分析与比较。

Cross-species analysis and comparison of the inner ear between chickens and mice.

机构信息

Department of ENT Institute and Otorhinolaryngology, Eye & ENT Hospital, State Key Laboratory of Medical Neurobiology, NHC Key Laboratory of Hearing Medicine Research, Fudan University, Shanghai, P. R. China.

Institutes of Biomedical Sciences, Fudan University, Shanghai, P. R. China.

出版信息

J Comp Neurol. 2023 Oct;531(14):1443-1458. doi: 10.1002/cne.25524. Epub 2023 Jul 18.

DOI:10.1002/cne.25524
PMID:37462291
Abstract

The inner ear of mammals includes the cochlea and vestibule, which house specialized hair cells that are responsible for hearing and balance, respectively. While cochlear hair cells fail to regenerate following damage, those of the utricle, which is part of the vestibular apparatus, show partial regeneration. In birds, the macula lagena, a unique ear structure in this clade, has the ability to regenerate hair cells similarly to the utricle. Many studies have sought to explain regeneration in terms of evolution and species differences. However, it remains unclear what the cellular and molecular basis is behind the differences in inner ear structures and between avians and mammals. In the present study, we first investigated the anatomical structures of the inner ear of both chickens and rodents. We then performed RNA sequencing (RNA-Seq) and made cross-species analyses of the expression of homologous genes obtained from the inner ear tissue from both chickens and mice. Finally, we focused on the lagena, the basilar papilla, and the utricle in chickens and identified differentially expressed genes between tissues and determined the expression patterns of genes involved in inner ear structure formation by single-cell RNA sequencing and bulk RNA-Seq. We concluded that the cellular and molecular composition of the lagena is more similar to that of the utricle than the cochlea. Taken together, our study provides a valuable resource for the study of inner ear evolution and development.

摘要

哺乳动物的内耳包括耳蜗和前庭,其中分别容纳了专门的毛细胞,这些毛细胞分别负责听觉和平衡。虽然耳蜗毛细胞在受损后无法再生,但前庭器官的一部分——椭圆囊的毛细胞则显示出部分再生能力。在鸟类中,独特的耳结构——瓶状囊斑具有类似于椭圆囊的毛细胞再生能力。许多研究试图从进化和物种差异的角度来解释再生现象。然而,内耳结构的差异以及鸟类和哺乳动物之间的差异的细胞和分子基础仍不清楚。在本研究中,我们首先研究了鸡和啮齿动物内耳的解剖结构。然后,我们对从鸡和鼠的内耳组织中获得的同源基因进行了 RNA 测序(RNA-Seq)和种间分析。最后,我们重点研究了鸡的瓶状囊斑、基底乳头和椭圆囊,鉴定了组织间差异表达基因,并通过单细胞 RNA 测序和批量 RNA-Seq 确定了参与内耳结构形成的基因表达模式。我们得出的结论是,瓶状囊斑的细胞和分子组成与椭圆囊更相似,而与耳蜗不同。综上所述,我们的研究为内耳进化和发育的研究提供了有价值的资源。

相似文献

1
Cross-species analysis and comparison of the inner ear between chickens and mice.鸡和鼠内耳的种间分析与比较。
J Comp Neurol. 2023 Oct;531(14):1443-1458. doi: 10.1002/cne.25524. Epub 2023 Jul 18.
2
In Ovo and Ex Ovo Methods to Study Avian Inner Ear Development.在鸡胚和鸡胚外方法研究禽类内耳发育。
J Vis Exp. 2022 Jun 16(184). doi: 10.3791/64172.
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Overlapping and distinct pRb pathways in the mammalian auditory and vestibular organs.哺乳动物听觉和前庭器官中重叠而又独特的 pRb 通路。
Cell Cycle. 2011 Jan 15;10(2):337-51. doi: 10.4161/cc.10.2.14640.
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Nestin-expressing cells are mitotically active in the mammalian inner ear.巢蛋白表达细胞在哺乳动物内耳中具有有丝分裂活性。
Hear Res. 2024 Mar 1;443:108962. doi: 10.1016/j.heares.2024.108962. Epub 2024 Jan 23.
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Transcriptomic and epigenetic regulation of hair cell regeneration in the mouse utricle and its potentiation by Atoh1.毛细胞在小鼠耳石器中的转录组和表观遗传调控及其由 Atoh1 增强。
Elife. 2019 Apr 29;8:e44328. doi: 10.7554/eLife.44328.
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Cell-type identity of the avian utricle.禽类囊的细胞类型特征。
Cell Rep. 2022 Sep 27;40(13):111432. doi: 10.1016/j.celrep.2022.111432.
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The transcriptome of utricle hair cell regeneration in the avian inner ear.禽类内耳毛细胞再生的转录组。
J Neurosci. 2014 Mar 5;34(10):3523-35. doi: 10.1523/JNEUROSCI.2606-13.2014.
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Localization of efferent neurotransmitters in the inner ear of the homozygous Bronx waltzer mutant mouse.纯合子布朗克斯华尔兹突变小鼠内耳传出神经递质的定位
Hear Res. 2002 May;167(1-2):136-55. doi: 10.1016/s0378-5955(02)00382-9.
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Observation in inner ear of tree shrew using scanning electron microscope and the Atoh1 distribution in cochlea.利用扫描电子显微镜对树鼩内耳进行观察以及Atoh1在耳蜗中的分布
Microsc Res Tech. 2022 May;85(5):1837-1844. doi: 10.1002/jemt.24045. Epub 2021 Dec 27.
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Methods to Investigate Cell Polarity of Inner Ear.研究内耳细胞极性的方法。
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引用本文的文献

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Single-cell atlas comparison across vertebrates reveals auditory cell evolution and mechanisms for hair cell regeneration.跨脊椎动物的单细胞图谱比较揭示了听觉细胞的进化和毛细胞再生机制。
Commun Biol. 2024 Dec 19;7(1):1648. doi: 10.1038/s42003-024-07335-7.
2
Irx3/5 Null Deletion in Mice Blocks Cochlea-Saccule Segregation and Disrupts the Auditory Tonotopic Map.小鼠中Irx3/5基因的无效缺失会阻碍耳蜗-球囊分离并破坏听觉音调拓扑图。
J Comp Neurol. 2024 Dec;532(12):e70008. doi: 10.1002/cne.70008.
3
Molecular specializations underlying phenotypic differences in inner ear hair cells of zebrafish and mice.
斑马鱼和小鼠内耳毛细胞表型差异背后的分子特化
Front Neurol. 2024 Oct 17;15:1437558. doi: 10.3389/fneur.2024.1437558. eCollection 2024.
4
Molecular Specializations Underlying Phenotypic Differences in Inner Ear Hair Cells of Zebrafish and Mice.斑马鱼和小鼠内耳毛细胞表型差异背后的分子特化
bioRxiv. 2024 May 26:2024.05.24.595729. doi: 10.1101/2024.05.24.595729.