State Key Laboratory of Bioelectronics, School of Biological Science & Medical Engineering, Southeast University, Nanjing 210096, China.
Laboratory Medicine Center, The Second Affiliated Hospital of Nanjing Medical University, Nanjing 210011, China.
ACS Synth Biol. 2023 Aug 18;12(8):2393-2402. doi: 10.1021/acssynbio.3c00221. Epub 2023 Jul 20.
DNA is an attractive medium for long-term data storage because of its density, ease of copying, sustainability, and longevity. Recent advances have focused on the development of new encoding algorithms, automation, and sequencing technologies. Despite progress in these subareas, the most challenging hurdle in the deployment of DNA storage remains the reliability of preservation and the repeatability of reading. Herein, we report the construction of a magnetic bead spherical nucleic acid (MB-SNA) composite microstructure and its use as a cost-effective platform for reliable DNA preservation and repeated reading. MB-SNA has an inner core of silica@γ-FeO@silica microbeads and an outer spherical shell of double-stranded DNA (dsDNA) with a density as high as 34 pmol/cm. For MB-SNA, each strand of dsDNA stored a piece of data, and the high-density packing of dsDNA achieved high-capacity storage. MB-SNA was advantageous in terms of reliable preservation over free DNA. By accelerated aging tests, the data of MB-SNA is demonstrated to be readable after 0.23 million years of preservation at -18 °C and 50% relative humidity. Moreover, MB-SNA facilitated repeated reading by facile PCR-magnetic separation. After 10 cycles of PCR access, the retention rate of dsDNA for MB-SNA is demonstrated to be as high as 93%, and the accuracy of sequencing is more than 98%. In addition, MB-SNA makes cost-effective DNA storage feasible. By serial dilution, the physical limit for MB-SNA to achieve accurate reading is probed to be as low as two microstructures.
DNA 是一种有吸引力的长期数据存储介质,因为它具有高密度、易于复制、可持续性和长寿命等优点。最近的进展集中在新的编码算法、自动化和测序技术的开发上。尽管在这些子领域取得了进展,但 DNA 存储部署中最具挑战性的障碍仍然是保存的可靠性和读取的可重复性。在此,我们报告了一种磁性珠球形核酸(MB-SNA)复合材料微结构的构建及其作为一种具有成本效益的可靠 DNA 保存和重复读取平台的用途。MB-SNA 的内部核心是硅@γ-FeO@硅微珠,外部是双链 DNA(dsDNA)的球形外壳,密度高达 34 pmol/cm。对于 MB-SNA,每条 dsDNA 链存储一条数据,dsDNA 的高密度包装实现了高容量存储。与游离 DNA 相比,MB-SNA 在可靠保存方面具有优势。通过加速老化测试,证明 MB-SNA 的数据在 -18°C 和 50%相对湿度下保存 0.23 百万年后仍可读取。此外,MB-SNA 通过简单的 PCR-磁分离促进了重复读取。在 10 次 PCR 访问循环后,MB-SNA 中 dsDNA 的保留率被证明高达 93%,测序的准确性超过 98%。此外,MB-SNA 使具有成本效益的 DNA 存储成为可能。通过连续稀释,探测到 MB-SNA 实现准确读取的物理极限低至两个微结构。