Pian Yajing, Luo Haolong, Lin Rui, Zhou Li, Ren Xiangmei
Department of Nutrition, School of Public Health, Xuzhou Medical University, Xuzhou 221004, China.
Wei Sheng Yan Jiu. 2023 May;52(3):483-505. doi: 10.19813/j.cnki.weishengyanjiu.2023.03.024.
To analyze the mechanism of cadmium-induced cytotoxicity in mouse testicular mesenchymal cells(TM3) with transcriptome sequencing and bioinformatics techniques.
TM3 cells were selected as the cell model and divided into control group(no cadmium treatment) and cadmium-treated group(20 μmol/L CdCl_2). After 24 hours of administration, cells were harvested to extract total RNA, and then miRNA expression profiles were obtained by sequencing program after RNA quality detection. The fold change(FC) >2, P<0.05 was used as the standard to screen for differentially expressed miRNAs. The quantitative real-time polymerase chain reaction(qRT-PCR) was used to verify the differentially expressed miRNAs. Then, their target genes were predicted by miRanda software to construct miRNA-target gene interaction network, and their target genes were enriched by gene ontology(GO) and Kyoto encyclopedia of genes and genomes(KEGG) pathway function.
A total of 26 differentially expressed miRNAs were identified which may be related to cadmium-induced TM3 cytotoxicity, including 19 up-regulated and 7 down-regulated miRNAs. The result of qRT-PCR were consistent with the miRNA sequencing result. Meanwhile, bioinformatics analysis result showed that the 26 differentially expressed miRNAs predicted 657 target genes. GO enrichment was mainly classified into biological regulation, metabolic process, protein binding and catalytic activity. KEGG pathway analysis showed that target genes were significantly involved in mitogen-activated protein kinase(MAPK) and tumor necrosis factor(TNF) signal pathways closely related to inflammatory response and apoptosis.
Cadmium can lead to the differential expression of miRNAs in TM3 cells, and its target genes may be involved in Cd-induced TM3 cytotoxicity through signaling pathways such as MAPK and TNF.
运用转录组测序和生物信息学技术分析镉诱导小鼠睾丸间质细胞(TM3)细胞毒性的机制。
选取TM3细胞作为细胞模型,分为对照组(未用镉处理)和镉处理组(20 μmol/L CdCl₂)。给药24小时后,收集细胞提取总RNA,经RNA质量检测后通过测序程序获得miRNA表达谱。以折叠变化(FC)>2,P<0.05为标准筛选差异表达的miRNA。采用定量实时聚合酶链反应(qRT-PCR)验证差异表达的miRNA。然后,通过miRanda软件预测其靶基因,构建miRNA-靶基因相互作用网络,并通过基因本体论(GO)和京都基因与基因组百科全书(KEGG)通路功能对其靶基因进行富集。
共鉴定出26个可能与镉诱导的TM3细胞毒性相关的差异表达miRNA,其中19个上调,7个下调。qRT-PCR结果与miRNA测序结果一致。同时,生物信息学分析结果显示,这26个差异表达的miRNA预测出657个靶基因。GO富集主要分为生物调控、代谢过程、蛋白质结合和催化活性。KEGG通路分析表明,靶基因显著参与了与炎症反应和凋亡密切相关的丝裂原活化蛋白激酶(MAPK)和肿瘤坏死因子(TNF)信号通路。
镉可导致TM3细胞中miRNA的差异表达,其靶基因可能通过MAPK和TNF等信号通路参与镉诱导的TM3细胞毒性。