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环状RNA研究的最新进展:从生物发生到治疗干预

The recent advancements in circRNA research: From biogenesis to therapeutic interventions.

作者信息

Malviya Ayushi, Bhuyan Rajabrata

机构信息

Department of Bioscience and Biotechnology, Banasthali Vidyapith, Banasthali, Tonk, Rajasthan 304022, India.

Department of Bioscience and Biotechnology, Banasthali Vidyapith, Banasthali, Tonk, Rajasthan 304022, India.

出版信息

Pathol Res Pract. 2023 Aug;248:154697. doi: 10.1016/j.prp.2023.154697. Epub 2023 Jul 17.

DOI:10.1016/j.prp.2023.154697
PMID:37506629
Abstract

Circular RNAs (circRNAs) belong to the genre of long non-coding RNAs that are formed by special back-splicing events and are currently the molecule of interest for studies globally due their involvement in various ailments like diabetes, neurodegenerative disorders, cardio-vascular diseases and cancers. These class of highly stable RNAs participate in diverse cellular functionalities including microRNA (miRNA) sponging, ceRNA (competing endogenous RNA) activity or via exhibiting RNA binding protein (RBP) interactions. They are also known to regulate cancer progression both positively and negatively through various biological pathways such as, modulating the cell cycle and apoptotic pathways, epigenetic regulation, and translational and/or transcriptional regulations etc. Given its significance, a variety of computational tools and dedicated databases have been created for the identification, quantification, and differential expression of such RNAs in combination with sequencing approaches. In this review, we provide a comprehensive analysis of the numerous computational tools, pipelines, and online resources developed in recent years for the detection and annotation of circRNAs. We also summarise the most recent findings regarding the characteristics, functions, biological processes, and involvement of circRNAs in diseases. The review emphasises the significance of circRNAs as potential disease biomarkers and new treatment targets.

摘要

环状RNA(circRNAs)属于长链非编码RNA类别,由特殊的反向剪接事件形成,由于其参与糖尿病、神经退行性疾病、心血管疾病和癌症等各种疾病,目前是全球研究的热门分子。这类高度稳定的RNA参与多种细胞功能,包括充当微小RNA(miRNA)海绵、竞争性内源RNA(ceRNA)活性或通过展示与RNA结合蛋白(RBP)的相互作用。它们还通过各种生物学途径,如调节细胞周期和凋亡途径、表观遗传调控以及翻译和/或转录调控等,对癌症进展起到正向和负向调节作用。鉴于其重要性,已经创建了各种计算工具和专用数据库,结合测序方法来鉴定、定量和分析此类RNA的差异表达。在本综述中,我们对近年来开发的用于环状RNA检测和注释的众多计算工具、流程和在线资源进行了全面分析。我们还总结了关于环状RNA的特征、功能、生物学过程及其在疾病中的作用的最新发现。本综述强调了环状RNA作为潜在疾病生物标志物和新治疗靶点的重要性。

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