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通过下一代测序检测高苯丙氨酸血症潜在的单核苷酸和拷贝数缺陷

Detection of Single-Nucleotide and Copy Number Defects Underlying Hyperphenylalaninemia by Next-Generation Sequencing.

作者信息

Tendi Elisabetta Anna, Morello Giovanna, Guarnaccia Maria, La Cognata Valentina, Petralia Salvatore, Messina Maria Anna, Meli Concetta, Fiumara Agata, Ruggieri Martino, Cavallaro Sebastiano

机构信息

Biomedical Sciences Department, Institute for Biomedical Research and Innovation, National Research Council, Via Paolo Gaifami 18, 95026 Catania, Italy.

Department of Drug and Health Sciences, University of Catania, 95125 Catania, Italy.

出版信息

Biomedicines. 2023 Jul 4;11(7):1899. doi: 10.3390/biomedicines11071899.

DOI:10.3390/biomedicines11071899
PMID:37509538
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10377317/
Abstract

Hyperphenylalaninemia (HPA) is the most common inherited amino acid metabolism disorder characterized by serious clinical manifestations, including irreversible brain damage, intellectual deficiency and epilepsy. Due to its extensive genic and allelic heterogeneity, next-generation sequencing (NGS) technology may help to identify the molecular basis of this genetic disease. Herein, we describe the development and validation of a targeted NGS (tNGS) approach for the simultaneous detection of single-nucleotide changes and copy number variations (CNVs) in genes associated with HPA (, , , , , ) or useful for its differential diagnosis (). Our tNGS approach offers the possibility to detail, with a high accuracy and in a single workflow, the combined effect of a broader spectrum of genomic variants in a comprehensive view, providing a significant step forward in the development of optimized patient care and management.

摘要

高苯丙氨酸血症(HPA)是最常见的遗传性氨基酸代谢紊乱疾病,具有严重的临床表现,包括不可逆的脑损伤、智力缺陷和癫痫。由于其广泛的基因和等位基因异质性,下一代测序(NGS)技术可能有助于确定这种遗传病的分子基础。在此,我们描述了一种靶向NGS(tNGS)方法的开发和验证,该方法可同时检测与HPA相关的基因(、、、、、)中的单核苷酸变化和拷贝数变异(CNV),或对其鉴别诊断有用的基因()。我们的tNGS方法提供了一种可能性,即在单一工作流程中以高精度详细描述更广泛基因组变异的综合效应,在优化患者护理和管理的发展方面向前迈出了重要一步。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/106b/10377317/12fd9a86acf4/biomedicines-11-01899-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/106b/10377317/5351bc793219/biomedicines-11-01899-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/106b/10377317/ecd2d7601512/biomedicines-11-01899-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/106b/10377317/12fd9a86acf4/biomedicines-11-01899-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/106b/10377317/5351bc793219/biomedicines-11-01899-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/106b/10377317/ecd2d7601512/biomedicines-11-01899-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/106b/10377317/12fd9a86acf4/biomedicines-11-01899-g003.jpg

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Genes (Basel). 2021 Oct 30;12(11):1750. doi: 10.3390/genes12111750.
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An Updated Mutational Spectrum of Phenylketonuria in Mexican Patients Attending a Single Center: Biochemical, Clinical-Genotyping Correlations.《单一中心就诊的墨西哥苯丙酮尿症患者基因突变谱的更新:生化与临床表型-基因型相关性分析》
Genes (Basel). 2021 Oct 23;12(11):1676. doi: 10.3390/genes12111676.
4
Design and Validation of a Custom NGS Panel Targeting a Set of Lysosomal Storage Diseases Candidate for NBS Applications.设计和验证针对一组溶酶体贮积症候选基因的定制 NGS 面板,用于 NBS 应用。
Int J Mol Sci. 2021 Sep 17;22(18):10064. doi: 10.3390/ijms221810064.
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Mol Genet Genomic Med. 2021 Mar;9(3):e1559. doi: 10.1002/mgg3.1559. Epub 2021 Jan 19.
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The Genetic Landscape and Epidemiology of Phenylketonuria.苯丙酮尿症的遗传景观和流行病学。
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