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全面、靶向的下一代测序方法评估溶酶体贮积症的分子诊断。

A Comprehensive, Targeted NGS Approach to Assessing Molecular Diagnosis of Lysosomal Storage Diseases.

机构信息

Institute for Biomedical Research and Innovation (IRIB), National Research Council (CNR), 95126 Catania, Italy.

出版信息

Genes (Basel). 2021 Oct 30;12(11):1750. doi: 10.3390/genes12111750.

Abstract

With over 60 different disorders and a combined incidence occurring in 1:5000-7000 live births, lysosomal storage diseases (LSDs) represent a major public health problem and constitute an enormous burden for affected individuals and their families. Several reasons make the diagnosis of LSDs an arduous task for clinicians, including the phenotype and penetrance variability, the shared signs and symptoms, and the uncertainties related to biochemical enzymatic assay results. Developing a powerful diagnostic tool based on next generation sequencing (NGS) technology may help reduce the delayed diagnostic process for these families, leading to better outcomes for current therapies and providing the basis for more appropriate genetic counseling. Herein, we employed a targeted NGS-based panel to scan the coding regions of 65 LSD-causative genes. A reference group sample ( = 26) with previously known genetic mutations was used to test and validate the entire workflow. Our approach demonstrated elevated analytical accuracy, sensitivity, and specificity. We believe the adoption of comprehensive targeted sequencing strategies into a routine diagnostic route may accelerate both the identification and management of LSDs with overlapping clinical profiles, producing a significant reduction in delayed diagnostic response with beneficial results in the treatment outcome.

摘要

溶酶体贮积症(LSDs)超过 60 种不同的疾病,其发病率为每 5000-7000 例活产儿中有 1 例,是一个主要的公共卫生问题,给受影响的个人及其家庭带来了巨大的负担。有几个原因使得 LSDs 的诊断对临床医生来说是一项艰巨的任务,包括表型和外显率的可变性、共同的体征和症状,以及生化酶学检测结果的不确定性。开发一种基于下一代测序(NGS)技术的强大诊断工具,可能有助于减少这些家庭的延迟诊断过程,为当前的治疗提供更好的结果,并为更合适的遗传咨询提供基础。在此,我们采用靶向 NGS 检测 panel 对 65 个 LSD 致病基因的编码区进行了扫描。使用已知遗传突变的参考组样本(n=26)对整个工作流程进行了测试和验证。我们的方法显示出了较高的分析准确性、灵敏度和特异性。我们相信,将全面的靶向测序策略纳入常规诊断流程中,可能会加速具有重叠临床特征的 LSD 的识别和管理,显著减少延迟诊断的反应,并在治疗结果中带来有益的效果。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/df5c/8617937/942b34050384/genes-12-01750-g001.jpg

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