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新型含乙酰胺基-磺胺类化合物的支架:抗尿素酶活性筛选、构效关系、动力学机制、分子对接和 MD 模拟研究。

New Acetamide-Sulfonamide-Containing Scaffolds: Antiurease Activity Screening, Structure-Activity Relationship, Kinetics Mechanism, Molecular Docking, and MD Simulation Studies.

机构信息

School of Chemistry, University of the Punjab, Lahore 54590, Pakistan.

Department of Microbiology, Immunology and Cancer Biology, School of Medicine, University of Virginia, Charlottesville, VA 22904, USA.

出版信息

Molecules. 2023 Jul 13;28(14):5389. doi: 10.3390/molecules28145389.

Abstract

The development of novel scaffolds that can increase the effectiveness, safety, and convenience of medication therapy using drug conjugates is a promising strategy. As a result, drug conjugates are an active area of research and development in medicinal chemistry. This research demonstrates acetamide-sulfonamide scaffold preparation after conjugation of ibuprofen and flurbiprofen with sulfa drugs, and these scaffolds were then screened for urease inhibition. The newly designed conjugates were confirmed by spectroscopic techniques such as IR, 1HNMR, 13CNMR, and elemental analysis. Ibuprofen conjugated with sulfathiazole, flurbiprofen conjugated with sulfadiazine, and sulfamethoxazole were found to be potent and demonstrated a competitive mode of urease inhibition, with IC50 (µM) values of 9.95 ± 0.14, 16.74 ± 0.23, and 13.39 ± 0.11, respectively, and urease inhibition of 90.6, 84.1, and 86.1% respectively. Ibuprofen conjugated with sulfanilamide, sulfamerazine, and sulfacetamide, whereas flurbiprofen conjugated with sulfamerazine, and sulfacetamide exhibited a mixed mode of urease inhibition. Moreover, through molecular docking experiments, the urease receptor-binding mechanisms of competitive inhibitors were anticipated, and stability analysis through MD simulations showed that these compounds made stable complexes with the respective targets and that no conformational changes occurred during the simulation. The findings demonstrate that conjugates of approved therapeutic molecules may result in the development of novel classes of pharmacological agents for the treatment of various pathological conditions involving the urease enzyme.

摘要

开发新型支架可以提高药物偶联物在药物治疗中的有效性、安全性和便利性,这是一种很有前途的策略。因此,药物偶联物是药物化学领域的一个活跃的研究和开发领域。本研究展示了将布洛芬和氟比洛芬与磺胺类药物偶联后制备的乙酰胺-磺酰胺支架,并对这些支架进行了脲酶抑制筛选。新设计的缀合物通过红外光谱(IR)、1HNMR、13CNMR 和元素分析等光谱技术得到证实。发现布洛芬与磺胺噻唑偶联物、氟比洛芬与磺胺嘧啶偶联物和磺胺甲恶唑具有很强的抑制脲酶作用,并表现出竞争性抑制脲酶的模式,IC50(µM)值分别为 9.95±0.14、16.74±0.23 和 13.39±0.11,抑制脲酶的活性分别为 90.6%、84.1%和 86.1%。而布洛芬与磺胺、磺胺甲嘧啶和磺胺噻唑偶联物,氟比洛芬与磺胺甲嘧啶和磺胺噻唑偶联物则表现出混合模式的脲酶抑制。此外,通过分子对接实验,预期了竞争性抑制剂的脲酶受体结合机制,通过 MD 模拟的稳定性分析表明,这些化合物与各自的靶标形成了稳定的复合物,并且在模拟过程中没有发生构象变化。研究结果表明,将已批准的治疗性分子偶联可能会开发出治疗涉及脲酶的各种病理状况的新型药理学药物。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4237/10386649/2d80ad096ac8/molecules-28-05389-g001.jpg

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