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加速低浓度下的脂质翻转:一种用于膜结合肽的通用机制。

Accelerating Lipid Flip-Flop at Low Concentrations: A General Mechanism for Membrane Binding Peptides.

机构信息

Department of Chemistry, University of Oslo, Postboks 1033 Blindern, 0315 Oslo, Norway.

Hylleraas Centre for Quantum Molecular Sciences, University of Oslo, 0315 Oslo, Norway.

出版信息

J Phys Chem Lett. 2023 Aug 10;14(31):7014-7019. doi: 10.1021/acs.jpclett.3c01284. Epub 2023 Jul 31.

Abstract

We report a physicochemical investigation of the lipid transport properties of model lipid membranes in the presence of the antimicrobial peptide indolicidin through comparisons of experimental SANS/SAXS scattering techniques to fully atomistic molecular dynamics simulations. In agreement with the experiment, we show that upon peripheral binding of the peptides, even at low concentrations, lipid flip-flop dynamics is greatly accelerated. Computer modeling elucidates the interplay between structural changes and lipid dynamics induced by peptides and proposes a mechanism for the mode of action of antimicrobial peptides, assessing the major role of entropy for the catalysis of the flipping events. The mechanism introduced here is universal for all peptides with preferential peripheral binding to the membrane as it does not depend on the specific amino acid sequence.

摘要

我们通过比较实验小角 X 射线散射(SANS)/小角 X 射线散射(SAXS)散射技术和全原子分子动力学模拟,报告了模型脂质膜在抗菌肽吲哚西林存在下的脂质传输特性的物理化学研究。与实验一致,我们表明,即使在低浓度下,当肽在周边结合时,脂质翻转动力学也会大大加速。计算机建模阐明了肽引起的结构变化和脂质动力学之间的相互作用,并提出了一种抗菌肽作用模式的机制,评估了熵在翻转事件催化中的主要作用。引入的这种机制对于所有优先与膜外周结合的肽都是通用的,因为它不依赖于特定的氨基酸序列。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/14d1/10424232/86c217977579/jz3c01284_0001.jpg

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