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用于验证儿童癌症登记数据的本体设计。

An ontology design for validating childhood cancer registry data.

作者信息

Nicholson Nicholas, Giusti Francesco, Martos Carmen

机构信息

European Commission, Joint Research Centre (JRC), Ispra, Italy.

Belgian Cancer Registry, Brussels, Belgium.

出版信息

Front Oncol. 2023 Jul 17;13:1212434. doi: 10.3389/fonc.2023.1212434. eCollection 2023.

Abstract

Ontologies can provide a valuable role in the work of cancer registration, particularly as a tool for managing and navigating the various classification systems and coding rules. Further advantages accrue from the ability to formalise the coding rule base using description logics and thereby benefit from the associated automatic reasoning functionality. Drawing from earlier work that showed the viability of applying ontologies in the data validation tasks of cancer registries, an ontology was created using a modular approach to handle the specific checks for childhood cancers. The ontology was able to handle successfully the various inter-variable checks using the axiomatic constructs of the web ontology language. Application of an ontological approach for data validation can greatly simplify the maintenance of the coding rules and facilitate the federation of any centralised validation process to the local level. It also provides an improved means of visualising the rule interdependencies from different perspectives. Performance of the automatic reasoning process can be a limiting issue for very large datasets and will be a focus for future work. Results are provided showing how the ontology is able to validate cancer case records typical for childhood tumours.

摘要

本体论在癌症登记工作中可发挥重要作用,尤其是作为管理和梳理各种分类系统及编码规则的工具。通过使用描述逻辑将编码规则库形式化并由此受益于相关的自动推理功能,还能带来更多优势。借鉴早期表明在癌症登记处的数据验证任务中应用本体论可行性的工作,采用模块化方法创建了一个本体论来处理儿童癌症的特定检查。该本体论能够使用网络本体语言的公理结构成功处理各种变量间检查。将本体论方法应用于数据验证可极大简化编码规则的维护,并促进将任何集中式验证过程下放到地方层面。它还提供了一种从不同角度可视化规则相互依存关系的改进方法。对于非常大的数据集,自动推理过程的性能可能是一个限制问题,这将是未来工作的重点。给出的结果展示了该本体论如何能够验证儿童肿瘤典型的癌症病例记录。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b23b/10390255/b206c61608b4/fonc-13-1212434-g001.jpg

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