Goldberg Alexander, Xie Bing, Shi Lei
Computational Chemistry and Molecular Biophysics Section, Intramural Research Program, National Institute on Drug Abuse, National Institutes of Health, Baltimore, Maryland 21224.
bioRxiv. 2023 Jul 30:2023.07.27.550907. doi: 10.1101/2023.07.27.550907.
The dopamine D1 receptor (D1R) is a promising target for treating various psychiatric disorders. While upregulation of D1R activity has shown potential in alleviating motor and cognitive symptoms, orthosteric agonists have limitations, restricting their clinical applications. However, the discovery of several allosteric compounds specifically targeting the D1R, such as LY3154207, has opened new therapeutic avenues. Based on the cryo-EM structures of the D1R, we conducted molecular dynamics simulations to investigate the binding and allosteric mechanisms of LY3154207. Our simulations revealed that LY3154207 preferred the horizontal orientation above intracellular loop 2 (IL2) and stabilized the helical conformation of IL2. Moreover, LY3154207 binding induced subtle yet significant changes in key structural motifs and their neighboring residues. Notably, a cluster of residues centered around the Na binding site became more compact, while interactions involving the PIF motif and its neighboring residues were loosened upon LY3154207 binding, consistent with their role in opening the intracellular crevice for receptor activation. Additionally, we identified an allosteric pathway likely responsible for the positive allosteric effect of LY3154207 in enhancing Gs protein coupling. This mechanistic understanding of LY3154207's allosteric action at the D1R pave the way for the rational design of more potent and effective allosteric modulators.
多巴胺 D1 受体(D1R)是治疗各种精神疾病的一个有前景的靶点。虽然 D1R 活性的上调已显示出缓解运动和认知症状的潜力,但正构激动剂存在局限性,限制了它们的临床应用。然而,几种特异性靶向 D1R 的变构化合物的发现,如 LY3154207,开辟了新的治疗途径。基于 D1R 的冷冻电镜结构,我们进行了分子动力学模拟,以研究 LY3154207 的结合和变构机制。我们的模拟结果表明,LY3154207 更喜欢在细胞内环 2(IL2)上方的水平方向,并稳定了 IL2 的螺旋构象。此外,LY3154207 的结合在关键结构基序及其邻近残基中引起了细微但显著的变化。值得注意的是,围绕 Na⁺ 结合位点的一组残基变得更加紧凑,而涉及 PIF 基序及其邻近残基的相互作用在 LY3154207 结合后变得松散,这与其在打开细胞内缝隙以激活受体中的作用一致。此外,我们确定了一条变构途径,可能是 LY3154207 在增强 Gs 蛋白偶联方面产生正变构效应的原因。对 LY3154207 在 D1R 上的变构作用的这种机制理解为更有效和高效的变构调节剂的合理设计铺平了道路。