Computational Chemistry and Molecular Biophysics Section, Intramural Research Program, National Institute on Drug Abuse, National Institutes of Health, Baltimore, MD 21224, USA.
Int J Mol Sci. 2023 Aug 16;24(16):12848. doi: 10.3390/ijms241612848.
The dopamine D1 receptor (D1R) is a promising target for treating various psychiatric disorders. While upregulation of D1R activity has shown potential in alleviating motor and cognitive symptoms, orthosteric agonists have limitations, restricting their clinical applications. However, the discovery of several allosteric compounds specifically targeting the D1R, such as LY3154207, has opened new therapeutic avenues. Based on the cryo-EM structures of the D1R, we conducted molecular dynamics simulations to investigate the binding and allosteric mechanisms of LY3154207. Our simulations revealed that LY3154207 preferred the horizontal orientation above intracellular loop 2 (IL2) and stabilized the helical conformation of IL2. Moreover, LY3154207 binding induced subtle yet significant changes in key structural motifs and their neighboring residues. Notably, a cluster of residues centered around the Na-binding site became more compact, while interactions involving the PIF motif and its neighboring residues were loosened upon LY3154207 binding, consistent with their role in opening the intracellular crevice for receptor activation. Additionally, we identified an allosteric pathway likely responsible for the positive allosteric effect of LY3154207 in enhancing Gs protein coupling. This mechanistic understanding of LY3154207's allosteric action at the D1R paves the way for the rational design of more potent and effective allosteric modulators.
多巴胺 D1 受体(D1R)是治疗各种精神疾病的有前途的靶点。虽然 D1R 活性的上调显示出缓解运动和认知症状的潜力,但变构激动剂具有局限性,限制了它们的临床应用。然而,几种专门针对 D1R 的变构化合物的发现,如 LY3154207,开辟了新的治疗途径。基于 D1R 的冷冻电镜结构,我们进行了分子动力学模拟,以研究 LY3154207 的结合和变构机制。我们的模拟表明,LY3154207 优先选择在细胞内环 2(IL2)上方的水平取向,并稳定 IL2 的螺旋构象。此外,LY3154207 的结合诱导了关键结构基序及其相邻残基的细微但显著的变化。值得注意的是,以 Na 结合位点为中心的一组残基变得更加紧凑,而涉及 PIF 基序及其相邻残基的相互作用在 LY3154207 结合后变得松弛,这与它们在打开细胞内裂隙以激活受体的作用一致。此外,我们确定了一种变构途径,可能负责 LY3154207 增强 Gs 蛋白偶联的正变构效应。对 LY3154207 在 D1R 上的变构作用的这种机制理解为设计更有效和有效的变构调节剂铺平了道路。