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活动驱动的相转变导致染色质的相干流动。

Activity-Driven Phase Transition Causes Coherent Flows of Chromatin.

机构信息

Center for Soft Matter Research, Department of Physics, New York University, New York, New York 10003, USA.

出版信息

Phys Rev Lett. 2023 Jul 28;131(4):048401. doi: 10.1103/PhysRevLett.131.048401.

Abstract

We discover a new type of nonequilibrium phase transition in a model of chromatin dynamics, which accounts for the coherent motions that have been observed in experiment. The coherent motion is due to the long-range cooperation of molecular motors tethered to chromatin. Cooperation occurs if each motor acts simultaneously on the polymer and the surrounding solvent, exerting on them equal and opposite forces. This drives the flow of solvent past the polymer, which in turn affects the orientation of nearby motors and, if the drive is strong enough, an active polar ("ferromagnetic") phase of motors can spontaneously form. Depending on boundary conditions, either transverse flows or sustained longitudinal oscillations and waves are possible. Predicted length scales are consistent with experiments. We now have in hand a coarse-grained description of chromatin dynamics which reproduces the directed coherent flows of chromatin seen in experiments. This field-theoretic description can be analytically coupled to other features of the nuclear environment such as fluctuating or porous boundaries, local heterogeneities in the distribution of chromatin or its activity, leading to insights on the effects of activity on the cell nucleus and its contents.

摘要

我们在染色质动力学模型中发现了一种新的非平衡相变,这种相变解释了实验中观察到的相干运动。这种相干运动是由于与染色质相连的分子马达的长程合作。如果每个马达同时作用于聚合物和周围溶剂上,施加相等且相反的力,那么就会发生合作。这会导致溶剂流过聚合物,从而影响附近马达的方向,如果驱动力足够强,马达就会自发形成活跃的极性(“铁磁”)相。根据边界条件,可能会出现横向流动或持续的纵向振荡和波。预测的长度尺度与实验一致。我们现在掌握了一种粗粒化的染色质动力学描述,可以再现实验中观察到的染色质定向相干流动。这种场论描述可以与核环境的其他特征(如波动或多孔边界、染色质或其活性分布的局部非均质性)进行分析耦合,从而深入了解活性对细胞核及其内容物的影响。

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