Tram Van Thi Ngoc, Khoa Ta Hoang Dang, Anuraga Gangga, Dung Phan Vu Thuy, Xuan Do Thi Minh, Dey Sanskriti, Wang Chih-Yang, Liu Yen-Nien
International Ph.D. Program in Medicine, College of Medicine, Taipei Medical University, Taipei 110, Taiwan.
Department of Medical Laboratory, University Medical Center Ho Chi Minh City, Ho Chi Minh City 700000, Vietnam.
Int J Mol Sci. 2023 Jul 25;24(15):11930. doi: 10.3390/ijms241511930.
Prostate cancer (PCa) is one of the most prevalent cancers in men, yet its pathogenic pathways remain poorly understood. Transcriptomics and high-throughput sequencing can help uncover cancer diagnostic targets and understand biological circuits. Using prostate adenocarcinoma (PRAD) datasets of various web-based applications (GEPIA, UALCAN, cBioPortal, SR Plot, hTFtarget, Genome Browser, and MetaCore), we found that upregulated dysbindin domain-containing 1 () expression in primary prostate tumors was strongly correlated with pathways involving the cell cycle, mitotic in KEGG, WIKI, and REACTOME database, and transcription factor-binding sites with the gene in prostate samples. gene expression was influenced by sample type, cancer stage, and promoter methylation levels of different cancers, such as PRAD, liver hepatocellular carcinoma (LIHC), and lung adenocarcinoma (LUAD). Regulation of glycogen synthase kinase (GSK)-3β in bipolar disorder and ATP/ITP/GTP/XTP/TTP/CTP/UTP metabolic pathways was closely correlated with the gene and its co-expressed genes in PCa. gene expression was positively associated with immune infiltration of B cells, Myeloid-derived suppressor cell (MDSC), M2 macrophages, andneutrophil, whereas negatively correlated with CD8 T cells, T follicular helper cells, M1 macrophages, and NK cells in PCa. These findings suggest that DBNDD1 may serve as a viable prognostic marker not only for early-stage PCa but also for immunotherapies.
前列腺癌(PCa)是男性中最常见的癌症之一,但其致病途径仍知之甚少。转录组学和高通量测序有助于发现癌症诊断靶点并了解生物回路。利用各种基于网络的应用程序(GEPIA、UALCAN、cBioPortal、SR Plot、hTFtarget、基因组浏览器和MetaCore)的前列腺腺癌(PRAD)数据集,我们发现原发性前列腺肿瘤中上调的含dysbindin结构域蛋白1()表达与KEGG、WIKI和REACTOME数据库中涉及细胞周期、有丝分裂的途径以及前列腺样本中与该基因的转录因子结合位点密切相关。该基因的表达受样本类型、癌症分期以及不同癌症(如PRAD、肝细胞肝癌(LIHC)和肺腺癌(LUAD))的启动子甲基化水平影响。双相情感障碍中糖原合酶激酶(GSK)-3β的调节以及ATP/ITP/GTP/XTP/TTP/CTP/UTP代谢途径与PCa中的该基因及其共表达基因密切相关。在PCa中,该基因的表达与B细胞、髓系来源的抑制细胞(MDSC)、M2巨噬细胞和中性粒细胞的免疫浸润呈正相关,而与CD8 T细胞、滤泡辅助性T细胞、M1巨噬细胞和自然杀伤细胞呈负相关。这些发现表明,DBNDD1不仅可能是早期PCa的一个可行的预后标志物,而且对免疫治疗也有意义。