Jarończyk Małgorzata, Ostrowski Sławomir, Dobrowolski Jan Cz
National Medicines Institute, 30/34 Chełmska Street, 00-725 Warsaw, Poland.
Institute of Chemistry and Nuclear Technology, 16 Dorodna Street, 03-195 Warsaw, Poland.
Molecules. 2023 Jul 27;28(15):5684. doi: 10.3390/molecules28155684.
The structure, energetics, and aromaticity of c.a. 100 constitutional isomers and tautomers of pyrido[m,n]diazepines (m = 1, 2; n = 2, 3, 4, 5; m ≠ n) were studied at the B3LYP/cc-pVTZ level. The pyrido[1,3]diazepines appear the most, while pyrido[2,4]diazepines are the least stable (ca. 26 kcal/mol). In the pyrido[1,n]diazepine group (n = 2-5), the [1,5] isomers are higher in energy by ca. 4.5 kcal/mol and the [1,4] ones by ca. 7 kcal/mol, and the pyrido[1,2]diazepines are the least stable (ca. 20 kcal/mol). All the most stable pyrido[1,n]diazepines have N-atoms near the ring's junction bond but on opposite sites. The most stable [2,n]-forms are also those with the pyridine ring N6-atom near the junction bond. Surprisingly, for the [1,2]-, [1,3]-, and [1,4]-isomer condensation types of pyridine and diazepine rings, the same N9 > N7 > N6 > N8 stability pattern obeys. The stability remains similar in a water medium simulated with the Polarizable Continuum Model of the solvent and is conserved when calculated using the CAM-B3LYP or BHandHlyp functionals. The ring's aromaticity in the pyridine[m,n]diazepines was established based on the integral INICS index resulting from the NICSzz-scan curves' integration. The integral INICS index is physically justified through its relation to the ringcurrent as demonstrated by Berger, R.J.F., et al. Phys. Chem. Chem. Phys. 2022, 24, 624. The six-membered pyrido rings have negative INICS indices and can be aromatic only if they are not protonated at the N-atom. All protonated pyrido and seven-membered rings exhibit meaningful positive INICS values and can be assigned as antiaromatic. However, some non-protonated pyrido rings also have substantial positive INICS indices and are antiaromatic. A weak linear correlation ( = 0.72) between the INICS values of the pyridine I(6) and diazepine I(7) rings exists and is a consequence of the communication between the π-electron systems of the two rings. The juxtaposition of the INICS descriptor of the six- and seven-membered rings and diverse electron density parameters at the Ring Critical Points (RCP) revealed good correlations only with the Electrostatic Potentials from the electrons and nuclei (ESPe and ESPn). The relationships with other RCP parameters like electron density and its Laplacian, total energy, and the Hamiltonian form of kinetic energy density were split into two parts: one nearly constant for the six-membered rings and one linearly correlating for the seven-membered rings. Thus, most of the electron density parameters at the RCP of the six-membered rings of pyridodiazepines practically do not change with the diazepine type and the labile proton position. In contrast, those of the seven-membered rings display aromaticity changes in the antiaromatic diazepine with its ring structural modifications.
在B3LYP/cc-pVTZ水平上研究了约100种吡啶并[m,n]二氮杂卓(m = 1, 2;n = 2, 3, 4, 5;m ≠ n)的结构异构体和互变异构体的结构、能量和芳香性。吡啶并[1,3]二氮杂卓出现的最多,而吡啶并[2,4]二氮杂卓最不稳定(约26 kcal/mol)。在吡啶并[1,n]二氮杂卓组(n = 2 - 5)中,[1,5]异构体能量约高4.5 kcal/mol,[1,4]异构体约高7 kcal/mol,吡啶并[1,2]二氮杂卓最不稳定(约20 kcal/mol)。所有最稳定的吡啶并[1,n]二氮杂卓在环的连接键附近但在相对位置上有氮原子。最稳定的[2,n]形式也是吡啶环N6原子靠近连接键的那些。令人惊讶的是,对于吡啶环和二氮杂卓环的[1,2]-、[1,3]-和[1,4]-异构体缩合类型,遵循相同的N9 > N7 > N6 > N8稳定性模式。在使用溶剂的极化连续介质模型模拟的水介质中稳定性保持相似,并且在使用CAM - B3LYP或BHandHlyp泛函计算时也保持不变。基于NICSzz扫描曲线积分得到的积分INICS指数确定了吡啶并[m,n]二氮杂卓中环的芳香性。如Berger, R.J.F.等人在《物理化学化学物理》2022年第24卷第624页所证明的,积分INICS指数通过其与环电流的关系在物理上是合理的。六元吡啶环具有负的INICS指数,并且只有在其氮原子未质子化时才可能是芳香性的。所有质子化的吡啶环和七元环都表现出有意义的正INICS值,并且可以被指定为反芳香性的。然而,一些未质子化的吡啶环也有相当大的正INICS指数并且是反芳香性的。吡啶环I(6)和二氮杂卓环I(7)的INICS值之间存在弱线性相关性( = 0.72),这是两个环的π电子系统之间相互作用的结果。六元环和七元环的INICS描述符与环临界点(RCP)处的各种电子密度参数的并列显示仅与来自电子和原子核的静电势(ESPe和ESPn)有良好的相关性。与其他RCP参数如电子密度及其拉普拉斯算子、总能量和动能密度的哈密顿形式的关系分为两部分:一部分对于六元环几乎是恒定的,另一部分对于七元环是线性相关的。因此,吡啶并二氮杂卓六元环RCP处的大多数电子密度参数实际上不随二氮杂卓类型和不稳定质子位置而变化。相反,七元环的那些参数随着反芳香性二氮杂卓的环结构修饰而显示出芳香性变化。