Bao Z D, Wan J, Zhu W, Shen J X, Yang Y, Zhou X Y
Department of Neonatology, Children's Hospital of Nanjing Medical University, Nanjing, Jiangsu 210008, P.R. China.
Department of Neonatology, Jiangyin People's Hospital of Nantong University, Jiangyin, Jiangsu 214400, P.R. China.
Balkan J Med Genet. 2023 Jul 31;26(1):11-20. doi: 10.2478/bjmg-2023-0011. eCollection 2023 Jul.
Recent studies have addressed the association between lung development and long-noncoding RNAs (lncRNAs). But few studies have investigated the role of lncRNAs in neonatal respiratory distress syndrome (RDS). Thus, this study aimed to compare the expression profile of circulating lncRNAs between RDS infants and controls.
10 RDS infants and 5 controls were enrolled. RDS patients were further divided into mild and severe RDS subgroups. Blood samples were collected for the lncRNA expression profile. Subsequently, differentially expressed lncRNAs were screened out. Bioinformatics analysis was applied to establish a co-expression network of differential lncRNAs and mRNAs, and predict the underlying biological functions.
A total of 135 differentially expressed lncRNAs were identified, including 108 upregulated and 27 downregulated lncRNAs (fold-change>2 and <0.05) among the three groups (non-RDS, mild RDS and severe RDS groups). Of these lncRNAs, four were selected as showing higher fold changes and validated by qRT-PCR. ENST00000470527.1, ENST00000504497.1, ENST00000417781.5, and ENST00000440408.5 were increased not only in the plasma of total RDS patients but also in the severe RDS subgroup. Gene Ontology (GO) and Kyoto encyclopedia of genes and genomes (KEGG) analyses showed that differentially expressed lncRNAs may play important roles in RDS through regulating PI3KAkt, RAS, MAPK, and TGF-β signaling pathways.
The present results found that ENST00000470527.1, ENST00000504497.1, ENST00000417781.5, and ENST00000440408.5 may be invol ved in RDS. This could provide new insight into research of the potential pathophysiological mechanisms of preterm RDS.
近期研究探讨了肺发育与长链非编码RNA(lncRNA)之间的关联。但很少有研究调查lncRNA在新生儿呼吸窘迫综合征(RDS)中的作用。因此,本研究旨在比较RDS婴儿与对照组之间循环lncRNA的表达谱。
纳入10例RDS婴儿和5例对照组。RDS患者进一步分为轻度和重度RDS亚组。采集血样用于lncRNA表达谱分析。随后,筛选出差异表达的lncRNA。应用生物信息学分析建立差异lncRNA与mRNA的共表达网络,并预测潜在的生物学功能。
共鉴定出135个差异表达的lncRNA,包括三组(非RDS组、轻度RDS组和重度RDS组)中108个上调和27个下调的lncRNA(变化倍数>2且<0.05)。在这些lncRNA中,选择了四个变化倍数较高的进行qRT-PCR验证。ENST00000470527.1、ENST00000504497.1、ENST00000417781.5和ENST00000440408.5不仅在总RDS患者血浆中增加,在重度RDS亚组中也增加。基因本体论(GO)和京都基因与基因组百科全书(KEGG)分析表明,差异表达的lncRNA可能通过调节PI3KAkt、RAS、MAPK和TGF-β信号通路在RDS中发挥重要作用。
本研究结果发现ENST00000470527.1、ENST00000504497.1、ENST00000417781.5和ENST00000440408.5可能参与RDS。这可为早产RDS潜在病理生理机制的研究提供新的见解。