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Drug-Resistant Tuberculosis on the Balkan Peninsula: Determination of Drug Resistance Mechanisms with Xpert MTB/XDR and Whole-Genome Sequencing Analysis.巴尔干半岛的耐多药结核病:采用Xpert MTB/XDR和全基因组测序分析确定耐药机制
Microbiol Spectr. 2023 Mar 6;11(2):e0276122. doi: 10.1128/spectrum.02761-22.
2
Whole-genome sequencing to characterize the genetic structure and transmission risk of in Yichang city of China.全基因组测序分析中国宜昌市 的遗传结构和传播风险
Front Public Health. 2023 Jan 9;10:1047965. doi: 10.3389/fpubh.2022.1047965. eCollection 2022.
3
Rapid Molecular Assays for the Diagnosis of Drug-Resistant Tuberculosis.用于诊断耐药结核病的快速分子检测方法
Infect Drug Resist. 2022 Aug 29;15:4971-4984. doi: 10.2147/IDR.S381643. eCollection 2022.
4
Xpert MTB/XDR for detection of pulmonary tuberculosis and resistance to isoniazid, fluoroquinolones, ethionamide, and amikacin.Xpert MTB/XDR 检测系统用于检测肺结核病及异烟肼、氟喹诺酮类、乙胺丁醇和阿米卡星耐药性。
Cochrane Database Syst Rev. 2022 May 18;5(5):CD014841. doi: 10.1002/14651858.CD014841.pub2.
5
Acquired bedaquiline resistance during the treatment of drug-resistant tuberculosis: a systematic review.耐多药结核病治疗期间获得性贝达喹啉耐药性:一项系统评价
JAC Antimicrob Resist. 2022 Mar 29;4(2):dlac029. doi: 10.1093/jacamr/dlac029. eCollection 2022 Apr.
6
Can the GeneXpert MTB/XDR deliver on the promise of expanded, near-patient tuberculosis drug-susceptibility testing?GeneXpert MTB/XDR能否实现扩大近患者结核药物敏感性检测的承诺?
Lancet Infect Dis. 2022 Apr;22(4):e121-e127. doi: 10.1016/S1473-3099(21)00613-7. Epub 2022 Feb 25.
7
Detection of isoniazid, fluoroquinolone, ethionamide, amikacin, kanamycin, and capreomycin resistance by the Xpert MTB/XDR assay: a cross-sectional multicentre diagnostic accuracy study.采用Xpert MTB/XDR检测法检测异烟肼、氟喹诺酮、乙硫异烟胺、阿米卡星、卡那霉素和卷曲霉素耐药性:一项横断面多中心诊断准确性研究。
Lancet Infect Dis. 2022 Feb;22(2):242-249. doi: 10.1016/S1473-3099(21)00452-7. Epub 2021 Oct 7.
8
Correlating genetic mutations with isoniazid phenotypic levels of resistance in Mycobacterium tuberculosis isolates from patients with drug-resistant tuberculosis in a high burden setting.在高负担环境下,将耐药结核病患者的结核分枝杆菌分离株中的基因突变与异烟肼表型耐药水平相关联。
Eur J Clin Microbiol Infect Dis. 2021 Dec;40(12):2551-2561. doi: 10.1007/s10096-021-04316-0. Epub 2021 Jul 23.
9
Analytical performance of the Xpert MTB/XDR® assay for tuberculosis and expanded resistance detection.Xpert MTB/XDR® assay 分析性能:结核分枝杆菌及耐药性检测
Diagn Microbiol Infect Dis. 2021 Sep;101(1):115397. doi: 10.1016/j.diagmicrobio.2021.115397. Epub 2021 Apr 20.
10
Discordant line probe genotypic testing vs culture-based drug susceptibility phenotypic testing in TB endemic KwaZulu-Natal: Impact on bedside clinical decision making.在结核病流行的夸祖鲁-纳塔尔省,不一致的线性探针基因分型检测与基于培养的药物敏感性表型检测:对床边临床决策的影响。
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评价 Xpert MTB/XDR 检测在乌干达用于检测结核分枝杆菌对一线和二线药物敏感性的效果。

Evaluation of Xpert MTB/XDR test for susceptibility testing of Mycobacterium tuberculosis to first and second-line drugs in Uganda.

机构信息

Department of Medicine, School of Medicine, Clinical Epidemiology and Biostatistics Unit and Uganda Implementation Research Consortium, Makerere University, Kampala, Uganda.

Department of Medical Microbiology, Makerere University, Kampala, Uganda.

出版信息

PLoS One. 2023 Aug 17;18(8):e0284545. doi: 10.1371/journal.pone.0284545. eCollection 2023.

DOI:10.1371/journal.pone.0284545
PMID:37590288
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10434885/
Abstract

BACKGROUND

Drug-Resistant Tuberculosis (DR-TB) is one of the major challenges to TB control.

DESIGN AND METHODS

This was a blinded, laboratory-based cross-sectional study using sputum samples or culture isolates. Samples were from patients with rifampicin-resistant-TB and/or with high risk for isoniazid (INH) resistance and/or 2nd line fluoroquinolones (FQ) and injectable agents (IAs). The diagnostic accuracy of the Xpert® MTB/XDR test was compared to MGIT960 and the Hain Genotype® MTBDRplus and MDRsl assays (LPA) as reference DST methods. Factors for laboratory uptake of the Xpert® MTB/XDR test were also evaluated.

RESULTS

Of the 100 stored sputum samples included in this study, 65/99 (65.6%) were resistant to INH, 5/100 (5.0%) were resistant to FQ and none were resistant to IAs using MGIT960. The sensitivity and specificity, n (%; 95% Confidence Interval, CI) of Xpert® MTB/XDR test for; INH was 58 (89.2; 79.1-95.5) and 30 (88.2; 72.5-96.6) and for FQ; 4 (80.0; 28.3-99.4) and 95 (100; 96.2-100), respectively. Using LPA as a reference standard, a total of 52/98 (53.1%) were resistant to INH, 3/100 (3.0%) to FQ, and none to IA. The sensitivity and specificity, n (%; 95%CI) of Xpert® MTB/XDR test compared to LPA for; INH was 50 (96.1; 86.7-99.5) and 34 (74.0; 58.8-85.7) for FQ 3 (100; 29.2-100) and 96 (99.0; 94.3-99.9) respectively. The factors for laboratory uptake and roll-out of the Xpert® MTB/XDR test included: no training needed for technicians with, and one day for those without, previous Xpert-ultra experience, recording and reporting needs were not different from those of Xpert-ultra, the error rate was 4/100 (4%), one (1%) indeterminate rate and test turn-around-time were 1hr/45 minutes.

CONCLUSION

There is high sensitivity and specificity of Xpert® MTB/XDR test for isoniazid and fluoroquinolones. There are acceptable Xpert® MTB/XDR test attributes for the test uptake and roll-out.

摘要

背景

耐多药结核病(DR-TB)是结核病控制的主要挑战之一。

设计与方法

这是一项基于实验室的、盲法的横断面研究,使用痰液样本或培养分离物。样本来自利福平耐药性-TB 患者和/或异烟肼(INH)耐药高风险患者和/或二线氟喹诺酮类药物(FQ)和注射用药物(IA)。Xpert® MTB/XDR 检测的诊断准确性与 MGIT960 以及 Hain Genotype® MTBDRplus 和 MDRsl 检测(LPA)作为参考药物敏感性试验(DST)方法进行了比较。还评估了实验室采用 Xpert® MTB/XDR 检测的因素。

结果

在本研究纳入的 100 份储存的痰液样本中,99 份中有 65/(65.6%)对 INH 耐药,100 份中有 5/(5.0%)对 FQ 耐药,MGIT960 未检测到对 IA 耐药。Xpert® MTB/XDR 检测对 INH 的敏感性和特异性,n(%;95%置信区间,CI)分别为 58(89.2;79.1-95.5)和 30(88.2;72.5-96.6),对 FQ 的敏感性和特异性分别为 4(80.0;28.3-99.4)和 95(100;96.2-100)。使用 LPA 作为参考标准,98 份中有 52/(53.1%)对 INH 耐药,100 份中有 3/(3.0%)对 FQ 耐药,对 IA 均未耐药。Xpert® MTB/XDR 检测与 LPA 相比,对 INH 的敏感性和特异性分别为 50(96.1;86.7-99.5)和 34(74.0;58.8-85.7),对 FQ 的敏感性和特异性分别为 3(100;29.2-100)和 96(99.0;94.3-99.9)。Xpert® MTB/XDR 检测的实验室采用和推广因素包括:有 Xpert-ultra 经验的技术人员无需培训,无 Xpert-ultra 经验的技术人员培训一天即可上手,记录和报告需求与 Xpert-ultra 相同,错误率为 4/100(4%),1%(1%)不确定率,检测周转时间为 1 小时/45 分钟。

结论

Xpert® MTB/XDR 检测对异烟肼和氟喹诺酮类药物具有较高的敏感性和特异性。Xpert® MTB/XDR 检测具有可接受的检测采用和推广属性。