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通过外显子组测序偶然发现的与酶活性降低相关但无庞贝氏症相关症状的变异体。

variants associated with reduced enzymatic activity but lack of Pompe-related symptoms, incidentally identified by exome sequencing.

作者信息

Malekkou Anna, Theodosiou Athina, Alexandrou Angelos, Papaevripidou Ioannis, Sismani Carolina, Jacobs Edwin H, Ruijter George J G, Anastasiadou Violetta, Ourani Sofia, Athanasiou Emilia, Drousiotou Anthi, Grafakou Olga, Petrou Petros P

机构信息

Biochemical Genetics Department, The Cyprus Institute of Neurology and Genetics, P. O. Box 23462, 1683 Nicosia, Cyprus.

Cytogenetics and Genomics Department, The Cyprus Institute of Neurology and Genetics, P. O. Box 23462, 1683 Nicosia, Cyprus.

出版信息

Mol Genet Metab Rep. 2023 Aug 7;36:100997. doi: 10.1016/j.ymgmr.2023.100997. eCollection 2023 Sep.

DOI:10.1016/j.ymgmr.2023.100997
PMID:37600231
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10433214/
Abstract

Pompe disease is a rare metabolic myopathy caused by pathogenic variants affecting the activity of the lysosomal glycogen-degrading enzyme acid alpha-glucosidase (GAA). Impaired GAA function results in the accumulation of undegraded glycogen within lysosomes in multiple tissues but predominantly affects the skeletal, smooth and cardiac muscle. The degree of residual enzymatic activity appears to roughly correlate with the age of onset and the severity of the clinical symptoms. Here, we report four siblings in which the variants NM_000152.5:c.2237G > C p.(Trp746Ser) and NM_000152.5:c.266G > A p.(Arg89His) were identified as an incidental finding of clinical exome sequencing. These variants are listed in the ClinVar and the Pompe disease variant databases but are reported here for the first time in compound heterozygosity. All four siblings displayed normal urine tetrasaccharide levels and no clinical manifestations related to Pompe disease. Nevertheless, GAA enzymatic activity was within the range for late onset Pompe patients. Our report shows an association between a novel genotype and attenuated GAA enzymatic activity. The clinical significance can only be established by the regular monitoring of these individuals. The study highlights the major challenges for clinical care arising from incidental findings of next generation sequencing.

摘要

庞贝病是一种罕见的代谢性肌病,由影响溶酶体糖原降解酶酸性α-葡萄糖苷酶(GAA)活性的致病性变异引起。GAA功能受损导致未降解的糖原在多个组织的溶酶体内蓄积,但主要影响骨骼肌、平滑肌和心肌。残余酶活性的程度似乎与发病年龄和临床症状的严重程度大致相关。在此,我们报告了4名兄弟姐妹,在临床外显子组测序中意外发现了变异NM_000152.5:c.2237G>C p.(Trp746Ser)和NM_000152.5:c.266G>A p.(Arg89His)。这些变异列于ClinVar和庞贝病变异数据库中,但首次以复合杂合性在此报告。所有4名兄弟姐妹的尿四糖水平均正常,且无与庞贝病相关的临床表现。然而,GAA酶活性处于晚发型庞贝病患者的范围内。我们的报告显示了一种新的基因型与GAA酶活性减弱之间的关联。其临床意义只能通过对这些个体的定期监测来确定。该研究突出了下一代测序意外发现给临床护理带来的重大挑战。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4a52/10433214/5b828a0d8e63/gr1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4a52/10433214/5b828a0d8e63/gr1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4a52/10433214/5b828a0d8e63/gr1.jpg

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本文引用的文献

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ACMG SF v3.2 list for reporting of secondary findings in clinical exome and genome sequencing: A policy statement of the American College of Medical Genetics and Genomics (ACMG).ACMG SF v3.2 临床外显子组和基因组测序中报告次要发现的列表:美国医学遗传学与基因组学学会 (ACMG) 的政策声明。
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Therapeutic Options for the Management of Pompe Disease: Current Challenges and Clinical Evidence in Therapeutics and Clinical Risk Management.
庞贝病治疗管理的治疗选择:治疗与临床风险管理中的当前挑战及临床证据
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MetaRNN: differentiating rare pathogenic and rare benign missense SNVs and InDels using deep learning.MetaRNN:使用深度学习区分罕见致病性和罕见良性错义 SNV 和 InDel
Genome Med. 2022 Oct 8;14(1):115. doi: 10.1186/s13073-022-01120-z.
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The First Year Experience of Newborn Screening for Pompe Disease in California.加利福尼亚州庞贝氏病新生儿筛查的第一年经验
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